LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1808	ATGGGTGggCCGTTGCTCTGCTTCAACCGTgcggaagaagaagaagaagccgCCATGGTGAAGTACTCCAGAGAACCCGGCAATCCCACCAAGTCATGCAAGGCTAGAGGCGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGCTAAAGCTAAAAGATACTTGGAGGATGTTTTGGCCCACAAACAGGCCATTCCTTTCCGGCGCTTCTGTGGTGGTGTTGGGAGGACAGCCCAGGCTAAGAGCAGACACTCCAATGGACAGGGACGCTGGCCTGTCAAATCAGCTAAATTCATTTTAGATTTGCTGAAAAATGCTGAGAGTAATGCTGAGGTGAAAGGTCTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACCGAGCTCATGGGAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGCCTGAGACCCAATTGGCAACGAGCAAGAAGAAGGGTGCTCTTCGAAGTGGCGCTTCATCTTAA	600	0.4783	MGGPLLCFNRAEEEEEAAMVKYSREPGNPTKSCKARGADLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS	199

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu9g1808	199	Gene3D	Ribosomal protein L22/L17	19	198	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Ssu9g1808	199	MobiDBLite	consensus disorder prediction	172	199	-	-
	Ssu9g1808	199	TIGRFAM	uL22_arch_euk: ribosomal protein uL22	22	172	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Ssu9g1808	199	Pfam	Ribosomal protein L22p/L17e	35	170	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Ssu9g1808	199	ProSitePatterns	Ribosomal protein L22 signature.	145	169	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Ssu9g1808	199	PANTHER	60S RIBOSOMAL PROTEIN L17	19	199	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Ssu9g1808	199	Hamap	50S ribosomal protein L22 [rplV].	18	172	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Ssu9g1808	199	CDD	Ribosomal_L22	33	169	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Ssu9g1808	199	PANTHER	60S RIBOSOMAL PROTEIN L17-2-LIKE	19	199	-	-
	Ssu9g1808	199	SUPERFAMILY	Ribosomal protein L22	19	172	IPR036394	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1808	Ssu-Chr9	55413703	55415543	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu9g1808	19	192	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	89.655	9.62e-117	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1808	K02880		-	gmx:100800781	348.206

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu9g1808	9	55413703	55415543	Ssu5g2314	5	65556773	65559839	PCT