Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1803 ATGGATGTTGCCGAGGTTGAAGAAAATCTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTGTAACTGGGGATTCTGTtcttcaaaaatttgagaaGGCTAAATGTGCTCTTGAGGATAGTCTTAAACGGGTGGAAGATATTGTTCCTCAGTCTATTGGTTGTCAGATTGACGAAATTGTGAATGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTAAATGACTCTAATGACAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAGCAGCTCTTACAGAAAGAAGATCTCTAAAAAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGAAAAGAATCAATTATTGCTTATCTTTTGCACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCTGGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTagttcctttaattttaagCCAAATAATAGGAAATCAGGGCAAATGCTCCTTCCACCTGAAGAGTTAAGGTGTCCGATGTCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATACAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAGACTTTCGCATCTTTCTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTGTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCCGTAAATAGTGTCGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCTAAGGGGGGGAAATGCATCTGAAAATTTTTCTGCAGAAGAGGAAGATAATGTACAGtatcttaattttcttaaagtcTTGACAGAAGGGAACAATTGGAAGAGGAAATGTAAAGTGGTAGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTATGCATGAAGGGATTGTGATGGCTCTTGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTATTGTTGTTGGAGGAAATGACTTCAAAAACTAGTTCCTATGGTTGTGCAGCCGCCCTGTATCTGAATTTTTCTTGCCTTGAAGAAGCCAAGCATGTGATTGGCACGGGTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCATGCCATGACAGAAGTCCAGTGCAAGCTAGATTCCCTCCACGCGCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCCAACCTCCTTTCATCTGGCATCATCAATGGCCTACAATCCCTTCTTGTAGGCCAGGGGGATTGTATGTGGACAGAAAAATGCATTGCTGTTTTGATAAATTTGGCTGTTTCTCAAGCGGGGAGAGAGGAAATAATGTTGGCTCCTGGACTCATAAGCACCTTGGCTTCCACACTAGATACCGGGGAGCTCATAGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGACATGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCGGTGAATGGGACCTcgagaggaagagaaaaagctCAGAAGCTCTTGATGCTCTTCCGACAGCAGCGACAACGAGACCTTTCACCCATTAAGACAGATCAATGTGAATCTGACAGTAGTGATTTGTCTATGCCTCCTCCTGAAACGAAACCGCTATGTAAATCAATATCTAGAAGAAAGGTTGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2295 0.41 MDVAEVEENLFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAVTGDSVLQKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELASTVFALDPSEKQVGDDLIALLQQGRKLNDSNDSNELECFHLAATRLGITSSRAALTERRSLKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPMSLQLMSDPVIIASGQTYERVCIQKWFRDGHNTCPKTQQRLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESVDFNYWRLALSDSESTNSRSVNSVGSCKLKGVKVVPVEESGISELRGGNASENFSAEEEDNVQYLNFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAMHEGIVMALENGAMALFNLAVNNNRNKEIMISAGILLLLEEMTSKTSSYGCAAALYLNFSCLEEAKHVIGTGQAVQFLIQLLHAMTEVQCKLDSLHALYNLSTVPSNIPNLLSSGIINGLQSLLVGQGDCMWTEKCIAVLINLAVSQAGREEIMLAPGLISTLASTLDTGELIEQEQAASCLLILCNRSETCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFRQQRQRDLSPIKTDQCESDSSDLSMPPPETKPLCKSISRRKVGKAFSFLWKSKSYSVYQC 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1803 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Ssu9g1803 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Ssu9g1803 764 MobiDBLite consensus disorder prediction 222 241 - -
Ssu9g1803 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Ssu9g1803 764 Gene3D - 403 716 IPR011989 -
Ssu9g1803 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 755 - -
Ssu9g1803 764 MobiDBLite consensus disorder prediction 224 239 - -
Ssu9g1803 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Ssu9g1803 764 CDD RING-Ubox_PUB 283 325 IPR045210 -
Ssu9g1803 764 Coils Coil 175 195 - -
Ssu9g1803 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Ssu9g1803 764 PANTHER U BOX DOMAIN-CONTAINING 1 755 - -
Ssu9g1803 764 SUPERFAMILY ARM repeat 427 706 IPR016024 -
Ssu9g1803 764 MobiDBLite consensus disorder prediction 712 735 - -
Ssu9g1803 764 SUPERFAMILY RING/U-box 276 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1803 Ssu-Chr9 55317116 55320924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1803 1 763 U-box Gene Family AT1G24330 66.067 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1803 - - gmx:100804344 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1803 9 55317116 55320924 Ssu5g2307 5 65444632 65448571 PCT