Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1801 ATGATTGTGTTGGCGAATTCTGGTACGGGGCTTAGGAAACAGGTTTTTCCCGTAGACTACGAAACAGAGGTGTCGCAGCGTCTCGTAGACGCTGCTCATTACGGTGACACGGACGCCGCGTTCGAGTGTATCGCGAATCCCTCGGTGGACGTGAACTTCGTTGGAACGGTGTCGTTCAAGTCCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTGAACTCGGCGTACGAGGAGTTCAAGACCGAGCTCACTGCTCTGTTCCTGGCTGCGCACTCAGGGAATTTGACACTCCTCCGGAAGCTTCTGAATGTCGGAGCTAATGTAAACATGAGATTGTTCCGGGGCTATGCCACAACAGCATCAGTGAGAGAAGGCCATCTAAAAGTATTGGAAGTCCTTATCAATGCTGGGGCGTCACAGCATGCATGCGAGGAGGCTTTGTTGGAAGCAAGTTACTTGGGGAGGGCCAGATTTGCTGAACTACTCATGCAGTCCAACATGATTCGTCCTCAGGTTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGACGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATAGGACGTTGCTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCATTATTCGCCGCTGTGGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGCGTAAGGCTTGATAGCAAGGTCAAACTGGGGGCTTGGTCGTGGGACACAGATACAGGAGAAGAATTTCGTGTGGGTGTTGGACTAGCCGAGGCTTATCCTGTCACCTGGTGTGCTGTGGAGTATTTTGAATCCACTGGTGCTATATTGCATATGCTGCTCTGCCATCTCTCGCCTAATAGCTTACACTTTGGGAGGAACCTCTTACACCATGCTATCATTTGTAATAATGAAAAGGCAGTAAATATACTTCTAAACAGTGGTGCTGATGCAGAAGTGGTAGTGCAAACCACTGAAGAAACTAACGAACACCCTATTCACATGGCTGCACGGCTTGGATCATGTAACATTCTTCAGTGCCTGATTAATGGTGGTTGTAACTTGGACTCCCAAACAAAATCTGGAGATACAGCATTGATGATCTGCGCAAGGTACAAACACGAGAAGTGCCTTGGAATCCTAGCATCAGCAGGTGCTGATTTGGGGATGGTAAATTCATCTGGTCACTGTGCAACTTCAATTGCAAACTGTGTTCAGTGGGCTAAAGTCTTCCAGAGAGCAATTTTTGATGTAATCAGAGCCGGGAAGGTTGTTAAATCAAGCAATGCCTCTAGATTTTCGGCTTTGTTATTTGTAACTCGTGCAAATGACATAGAGGGTTTGAAGAAACTAGTTGAAAATGGGAACATTGATCTAGATGAGCAAAACGCCAATGGATTTTCAGCTGCCATGATAGCTGCGGTAGGGGGTAACGTGGAGGCTTTCAGGTTGCTTCTTTATGCTGGGGCTGATGTGACTAAGCTTAAAAACAAGTATGGTTTGACAGCCCTTGACCTCATAGATGTGAGCCAAAATGGTGAAGTGTTTCACAAGGTGATGCTTGAATATGCACTTAAAAAGGGCGGAAATAGTTCAACTGAGGTGAATCCTCTCCACCGTGCAGCTTGCTATGGGGACATGAACATTGTTCACAAACTACTAAAAGAAGGGTATGATGTCGATGCTTTTGATGGTCAAGGATATACCCCTTTGATGTTAGCAGCAAGAGGATGCCGTAGTGAAATGTGTGAGCTTTTGATCTCATGTGGAGCCAAATGTGATGTTCAGAATGAGAGACATGAAACGGCACTTTCACTTGCCAGAGAAAATGGTGCAGGAAATGATGCTGAGCGCGTGATAATGGATGAGCTAGCTCGAAGACTAATCTTGTGTGGGGCTCGTGTGAAGAAGCACACAAAATGTGGTAAAGGTTCACCTCATGGTAAGTTACTAGTGATGGTGGGAGCTGCTGGAGTCTTACGTTGGGGAAAATCAAGCAAGAGAAACGTGATTTGTAAAGAGGCTGAGGTTGGACCTAGTGAGAAATTTCGATGGAATCGCAGGAGGAAGTTTGATGTTGATGAGCCAGGAATGTTCCATGTGGTCACTACGAAAAATAAGCAGGTACATTTTGTGTGCGAAGGTGGGGATGAAATGGCTCAGTTGTGGGTAAGGGGGATTAAATTAGTAACTGGAGAAGCTATTTTTGGTCGAAGAGCTGATAAGGTTTGTGGCTAG 2292 0.4634 MIVLANSGTGLRKQVFPVDYETEVSQRLVDAAHYGDTDAAFECIANPSVDVNFVGTVSFKSKTTEIVLQDESPHRVNSAYEEFKTELTALFLAAHSGNLTLLRKLLNVGANVNMRLFRGYATTASVREGHLKVLEVLINAGASQHACEEALLEASYLGRARFAELLMQSNMIRPQVAVHALVSACCRGFVEVVDVLIKHGVDANAIDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVRLDSKVKLGAWSWDTDTGEEFRVGVGLAEAYPVTWCAVEYFESTGAILHMLLCHLSPNSLHFGRNLLHHAIICNNEKAVNILLNSGADAEVVVQTTEETNEHPIHMAARLGSCNILQCLINGGCNLDSQTKSGDTALMICARYKHEKCLGILASAGADLGMVNSSGHCATSIANCVQWAKVFQRAIFDVIRAGKVVKSSNASRFSALLFVTRANDIEGLKKLVENGNIDLDEQNANGFSAAMIAAVGGNVEAFRLLLYAGADVTKLKNKYGLTALDLIDVSQNGEVFHKVMLEYALKKGGNSSTEVNPLHRAACYGDMNIVHKLLKEGYDVDAFDGQGYTPLMLAARGCRSEMCELLISCGAKCDVQNERHETALSLARENGAGNDAERVIMDELARRLILCGARVKKHTKCGKGSPHGKLLVMVGAAGVLRWGKSSKRNVICKEAEVGPSEKFRWNRRRKFDVDEPGMFHVVTTKNKQVHFVCEGGDEMAQLWVRGIKLVTGEAIFGRRADKVCG 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1801 763 Gene3D - 17 170 IPR036770 -
Ssu9g1801 763 Pfam Ankyrin repeats (3 copies) 538 615 IPR002110 GO:0005515
Ssu9g1801 763 Pfam Ankyrin repeats (3 copies) 314 408 IPR002110 GO:0005515
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Ssu9g1801 763 PANTHER ANKYRIN DOMAIN PROTEIN 9 755 - -
Ssu9g1801 763 Gene3D - 541 665 IPR036770 -
Ssu9g1801 763 PANTHER ANKYRIN REPEAT-CONTAINING 9 755 - -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Ssu9g1801 763 SUPERFAMILY Ankyrin repeat 28 256 IPR036770 -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat region circular profile. 309 338 - -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Ssu9g1801 763 SUPERFAMILY Ankyrin repeat 310 637 IPR036770 -
Ssu9g1801 763 SMART ANK_2a 222 251 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 176 205 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 85 114 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 346 375 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 117 146 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 483 512 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 309 338 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 379 408 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 449 479 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 551 580 IPR002110 GO:0005515
Ssu9g1801 763 SMART ANK_2a 584 613 IPR002110 GO:0005515
Ssu9g1801 763 Gene3D - 433 540 IPR036770 -
Ssu9g1801 763 Gene3D - 171 262 IPR036770 -
Ssu9g1801 763 Gene3D - 305 432 IPR036770 -
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Ssu9g1801 763 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1801 Ssu-Chr9 55301024 55306061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1801 317 521 Ion Channels AT4G32500 28.037 4.96e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1801 - - gmx:100795638 1399.8