Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1797 ATGGCGGCTGGTAGACATGGAGGTTATCGTGACAACAAGTTTAGGGACCGTGAGTCCAATTTTGATGTTTCAAGGCgggtttttaataataattctaaaCAAGAGTACGATAGGATTAGGAATGGTAGCCGCGATGTTGCAAGGGGTGGGAACAGGGATGCAAGAGATAGGATTAGACCGAGACAGAAAGATATTAGGGAGAGGGAAGCTCCAAATGGCAGTTATCGCTCATCTTCGAGTAAGAGTGACTCAGGCAGCAGTGGCGGTTGTAGTCGGGGGCTTGGTCCCAGGCGATGTGTGTTTTCTGTTAAGAGTATGGATAGAGAGCCAGGTGAGCTTTCTAGTGAGAGTGGGTCTGAAGATGGTATTGAATCAGAATCACGGGAAAAATACTGCGAGGTTGCAACTGGTGAACAAAATGGGGCACAATCTCTGCTAGAgagcaaaagaaaattttcaccaGTAGTATCAGATCAGGATGACAGAGAAGGTTGTCACAGCATTGACTACTCTGCCTCCCCACCTCCACTTCCAAGAGTCCGACAGTCACCTAATGTTCCTTACAGTGGAGTAGAAACTCACCCTGTCAAAAACACACAAGCTGAGATCCTTGAGTTACCAACTGTAACTAATCCTCCTTTGCTGTCTGAGTCAGATCAGGATGCTGAGTCTGAGTCTCCTGTTGAGCCAGAGCAGAGATGGGGTAATGAGTGGGAAGCCAAGCAACCTGAAGGTGAAGATTATATTCCAACTCATAATATTTCGTCTTCAAGATGGGCAGCTAGAGATAACTCTCCTGGTGATGAAGGTGAAATCAATGATGACAGGGAAATCCCTAAGAGGAGGAAGCTATCTCCTGAGCTGGGTATGAGAGTAAGAAACAAGATGTCGAGACTGGaggaatctaaaattgaatctGAATCTGAAGAAAGAGGTAGCCATGGGAGATCATTCAGTGGAGATGATCATCCTAGTATTGAGTCAGAGAAGGATGATTATATGGAGATTGATGGTCAAGGTAGCAGAAGTGAAACTCGTGCTTATCAATCGGATACAGATTCTGAAGATGATAGCAGAGAAACTCCTGAACCTCTGGCTCCACCGCAAAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATTGATGAAGGAACATATGGTGTTGTGTATAGGGCCAAAGATAAGAAGACTGGTAAAATTGTGGCATTGAAAAAGGTGAAGatggagaaggaaaaagaaggtTTTCCGCTGACTTCTCTTAGGGAAATAAACattcttctttcctttcaccACCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAATCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTGAAAGGACTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCATAATGCTTCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTGAAGACCTCGAACCTGCTTCTGAATAATAGGGGTGagttaaaaatttgtgattttggatTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAGTATTCAACAGCCATTGATATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCGAAGGAACCACTGTTTAATGGGAAGACTGAATTTGATCAACTTGACAAGATTTTCAGCATTCTTGGCGCACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCTCGAGTAAAGGTCAATTTTGTCAAGAATCAGTATAATCTCCTGCGAAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTTACTTATGACCCTGAAAAGCGGATCACGGCTGAAGAGGCTCTAAACCACAAGTGGTTTCGTGAAGTTCCCCTTCCAAAGTCTAAAGAATTTATGCCTACATTCCCTGCTCAACATGCTCAAGACAGgcgAATGAGGAGAATAATAAAGAGCCCAGATCCATTAGCAGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAATCAGGGACTGGTGGTATTTTTGGTTAA 2193 0.415 MAAGRHGGYRDNKFRDRESNFDVSRRVFNNNSKQEYDRIRNGSRDVARGGNRDARDRIRPRQKDIREREAPNGSYRSSSSKSDSGSSGGCSRGLGPRRCVFSVKSMDREPGELSSESGSEDGIESESREKYCEVATGEQNGAQSLLESKRKFSPVVSDQDDREGCHSIDYSASPPPLPRVRQSPNVPYSGVETHPVKNTQAEILELPTVTNPPLLSESDQDAESESPVEPEQRWGNEWEAKQPEGEDYIPTHNISSSRWAARDNSPGDEGEINDDREIPKRRKLSPELGMRVRNKMSRLEESKIESESEERGSHGRSFSGDDHPSIESEKDDYMEIDGQGSRSETRAYQSDTDSEDDSRETPEPLAPPQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGKIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCIMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFSILGAPNETIWPGFSELPRVKVNFVKNQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEEALNHKWFREVPLPKSKEFMPTFPAQHAQDRRMRRIIKSPDPLAEQRRKELQQGESGTGGIFG 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1797 730 MobiDBLite consensus disorder prediction 31 71 - -
Ssu9g1797 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Ssu9g1797 730 MobiDBLite consensus disorder prediction 348 363 - -
Ssu9g1797 730 Gene3D Phosphorylase Kinase; domain 1 369 466 - -
Ssu9g1797 730 CDD STKc_CDC2L1 378 675 IPR045267 GO:0004674|GO:0005524|GO:0006468
Ssu9g1797 730 MobiDBLite consensus disorder prediction 226 246 - -
Ssu9g1797 730 Pfam Protein kinase domain 384 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1797 730 MobiDBLite consensus disorder prediction 203 221 - -
Ssu9g1797 730 ProSiteProfiles Protein kinase domain profile. 384 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1797 730 PANTHER - 282 730 - -
Ssu9g1797 730 SMART serkin_6 384 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1797 730 SUPERFAMILY Protein kinase-like (PK-like) 376 681 IPR011009 -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 102 133 - -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 72 89 - -
Ssu9g1797 730 Gene3D Transferase(Phosphotransferase) domain 1 467 706 - -
Ssu9g1797 730 PANTHER CELL DIVISION PROTEIN KINASE 282 730 - -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 153 167 - -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 1 370 - -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 8 23 - -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 706 730 - -
Ssu9g1797 730 MobiDBLite consensus disorder prediction 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1797 Ssu-Chr9 55276080 55279198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1797 375 716 Core Cell Cycle Gene Families AT5G10270 44.538 4.07e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Ssu9g1797 Pkinase 9.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1797 K08818 - gmx:100793729 1172.53