Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1790 ATGGAAGAGGAAATCAAGTCCGAATTCAAGAGAAGCGGGTTCGACCTCGAAGACGAAGAAGAAGTACTCAGCAAATGTGTCCCTTTCTGCATCAACTACAGTCTTAACCCTTCCGATCTCGTCTCAAGCTGGGAAGTTTATTACCTCAATAGACAGCTGAACGAACCAACAGTGCAAAATGCTGAAATTGATGGCTTTTTGTTGCATCTACAAAATCAGAAGAAAGAGGATGTGATAAAGGAACAAGAGGAAGCTGGCTTGCATACTTACTCTATTGGAGATGTAGAAATGATCTTAAATAACGATGATGATACAAAGGACAATCCTCCTGGAACTCCAATAGATCATCATCAAGATCTTTTTTCTCCTGCACCTGATACAACATCTTTAATGTATGAGAATGTTTTATCTTCTGGAAAACTGTCAAAATCAAAACTAGTAACACCCTTTTCAAAGCGAACAGATAGGTTTGCAGTGAAATTTAGCATCAACACTGTCCCTGATGTAGAGAATGGAAAACAAGAATCTAATCACGAGAATGTTGagaatgatgaagatgatgttGTTAGAAGAGTTCCACAACGTAAAAGATGTTCTTTGGTCATTCACGGATCAGGACCCAAACCAGGTTGCAGATTCATGTATGATAGAACAGAGGATAGGCTTAATGCAATAGAAAACCGAATTAGAAAACATACAAGGGCATTTGTAGCTTCTGGGCTCTATGAAGAACCAACAGACCCTACAACCGCTTCACAGaGAAGCATTTTTGCTGTTGGCATGATTTGTTGTGATGGAGAAGGCCGTTTAAACGAGAAGTCTGTCATGCTGCAGAGCAGTATTGAGCATTCTGGAGGGGAGTGTGTTCGCCTAGACTTACAACGTTTAAGCCATTATTCAATTTTTCCAGGCCAGGTAGTTGGTATTGGAGGGCATAATCCTAGTGGGCATTGCTTCGTTGCATCTAAATTGGTGGATTCTATACCTATCTCTGTTGCTGATGAGAATTTGAATCCTGCAAAGAAGCAAGCAATTGATAAGGAGAATCAGCCAACTGATCTGCTTTGTAAACAGAGAGAGTTATCAATGATTATTGCAGCTGGCCCCTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTATAGAACTGCTGGCATATGCAAAAAGAAGACCGCCACAGTTGCTTGTATTGCTGGGACCATTTGTTGACTCCGAACACCCAGACGTTAAGAAAGGAACTGTAGACAGGAGTTTTGatgaaatatttcattttgaaatCCTGAGGAAGTTGGAAGATTATGAAGAATGTGTGGGTTCGGCTACGCGTGTTCTTCTTATTCCATCTATACGGGATGCTCACcatgattttgtttttcctCAGCCTGCATTGGACATTAATCTTCCTGATCTCAAATCTCAGATAGTCAGTCTCAGTAATCCTGGAATCTTTGAGGCAAATGAGGTTAAGGTTGGTTGCTGCACCGTGGATATTCTCAAGCAAATTAGTGGGGAGGAGATATCACGAACTGTAGCAGATGGAAAACCTATTGATCGCTTGAGTAGACTTGCAGACCATATTCTTAACCAACAAAGCTTCTATCCACTTTACCCGCCAGCAGAAAGTGTTCCCTTGGACTTTTCGTTTGCTCCAGAAGCCCTTCAACTCTCATCGATTCCGGACGTACTTATCCTACCTTCAGACATCAAGTACTTTGTCAAGGTGCTTAGTAGTGAAAATGAAGGGATAAACCACATGAAATGCATAGCTGTCAATCCGGGAAGACTAGCCAAGGGAGAAGGAGGGGGAACTTTTGTCGAGCTTGATTATTGTGGGGGTGCTGACCAAATTAACGCTTCAATTGTTGGCATATGA 1875 0.4064 MEEEIKSEFKRSGFDLEDEEEVLSKCVPFCINYSLNPSDLVSSWEVYYLNRQLNEPTVQNAEIDGFLLHLQNQKKEDVIKEQEEAGLHTYSIGDVEMILNNDDDTKDNPPGTPIDHHQDLFSPAPDTTSLMYENVLSSGKLSKSKLVTPFSKRTDRFAVKFSINTVPDVENGKQESNHENVENDEDDVVRRVPQRKRCSLVIHGSGPKPGCRFMYDRTEDRLNAIENRIRKHTRAFVASGLYEEPTDPTTASQRSIFAVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSIFPGQVVGIGGHNPSGHCFVASKLVDSIPISVADENLNPAKKQAIDKENQPTDLLCKQRELSMIIAAGPFTTTDNLLFEPLIELLAYAKRRPPQLLVLLGPFVDSEHPDVKKGTVDRSFDEIFHFEILRKLEDYEECVGSATRVLLIPSIRDAHHDFVFPQPALDINLPDLKSQIVSLSNPGIFEANEVKVGCCTVDILKQISGEEISRTVADGKPIDRLSRLADHILNQQSFYPLYPPAESVPLDFSFAPEALQLSSIPDVLILPSDIKYFVKVLSSENEGINHMKCIAVNPGRLAKGEGGGTFVELDYCGGADQINASIVGI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1790 624 Pfam DNA polymerase alpha/epsilon subunit B 364 574 IPR007185 GO:0003677|GO:0006260
Ssu9g1790 624 Gene3D - 1 64 IPR043034 -
Ssu9g1790 624 Gene3D - 343 513 - -
Ssu9g1790 624 Gene3D - 514 618 - -
Ssu9g1790 624 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 620 IPR016722 -
Ssu9g1790 624 Coils Coil 215 235 - -
Ssu9g1790 624 PIRSF DNA_pol_alpha_2 1 611 IPR016722 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1790 2 624 Core DNA Replication Machinery Family AT1G67630 60.383 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1790 K02321 - gmx:100795306 1075.46