Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1783 ATGTATTTATCGGAGAAACCGCGTCCCATCGATTTCTACAAAGAGGAAGGCGCGCGCGACATGATGATCGAGGTGGTCTCCAACGGCGACCTCCCGCCGCCGCAGCAGCCGCCGCACCACGCGGCCGCGCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGCGAGGACCCCGAGGTGGAGATCAAGGCCCCGAAGAAACGCGCGGAGACGTGGGTGCAGGACGAGACGCGCTCCCTCATTGGGCTTCGCCGCGAGATGGACGCGCTCTTCAACACGTCCAAGTCCAACAAGCACCTGTGGGAGCAGATATCGGCGAAGATGAGAGAAAAGGGTTTCGATCGTTCCCCCACCATGTGCACCGATAAGTGGCGGAACCTGTTGAAGGAGTTCAAGAAGGCGAAGCAGCTGGACCGAGGAGGGAGTGGCTCTGCGAAGATGTCGTATTACAAAGAGATTGACGAGATCCTCAGAGAGAGGAGCAAGAGTGTGCAGTATAAGAGCCCTACTCCTCCGCCGAAGGTTGACTCGTTTATGCAGTTTGCTGATAAAGGTATTGACGATACTAGCATCTCTTTTGGGCCTGTAGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCGCAGCTGATGCTGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAGACTCCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGGGTGATTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAAGAGGCAATAAGAGCTGCTTTTAGGTTGAGAACTAAACGTACATTTTGGTTAGAGGATGAAGACCAGATTATCAGAAGTATTGACCGTGAAATGCCTATAGGAAATTACACTCTTCACCTTGATGAAGGAATGGCCATTAAACTATGCCTTTATGATGAGTCTGACCATCTCCCAGTGCATACTGAAGATAAGATATTTTACACTGAAGATGATTACCGTGATTTTCTGACACGCCGGGGTTGGATATGTCTAAGAGAATTTGACGCATATAGAAATATTGATAATATGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1149 0.4987 MYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPQQPPHHAAAPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKQLDRGGSGSAKMSYYKEIDEILRERSKSVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITAADAVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPIGNYTLHLDEGMAIKLCLYDESDHLPVHTEDKIFYTEDDYRDFLTRRGWICLREFDAYRNIDNMDDLRPGAIYRGVS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1783 382 MobiDBLite consensus disorder prediction 27 67 - -
Ssu9g1783 382 ProSiteProfiles Myb-like domain profile. 63 127 IPR001005 -
Ssu9g1783 382 Gene3D - 71 133 - -
Ssu9g1783 382 Pfam Myb/SANT-like DNA-binding domain 70 155 IPR044822 -
Ssu9g1783 382 CDD GT1 69 134 - -
Ssu9g1783 382 SMART sant 67 129 IPR001005 -
Ssu9g1783 382 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 381 - -
Ssu9g1783 382 PANTHER - 5 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1783 Ssu-Chr9 55140225 55143913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1783 20 381 Trihelix Transcription Factor Family AT3G25990 70.889 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu9g1783 Myb_DNA-bind_4 3.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1783 - - ccaj:109807736 741.495