Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1776 ATGGACAATAATGGTTGTTTCTCTTCCCCTCGACGCGATTTTCCTGCTGGTCTGCGAGTTCTCGTTGTGGATGATGATCCAACGTGGCTCAAGATCCTTGAAAAGATGCTTAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGCTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTCATTATGATGTCAGTTGATGGGGAAACAAGTAGGGTGATGAAAGGCGTTCAACATGGAGCGTGTGATTATCTCCTGAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAACATGTCTTTAGAAAAAGGATACATGAGGCTAGAGAATTTGAAAGTCTTGAGAGTTTTGAGAGCATTCACTTAATGAGAAATGGATCAGAGCAGTCAGATGATGGGAACCTGTTTGCCATAGAAGACGTGACCtcaacaaagaaaaggaaagatgcAGATAACAAACACGATGACAAAGAATGTTTGGATCCATCTTCCGCCAAGAAAGCTAGAGTAGTCTGGTCTGTTGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTAACTAGAGAGAATGTCGCTAGCCACTTGCAGAAATACCGACTTTATTTGAGTAGGATTCAGAAAGAAAACGACCAGAGATCTTCCTCAAGTGGAATGAAGCATTCAGATTTATCTTCAAAAGATCTGGGAAGTTTTGGTTTTCAGAACTCAGTAAACAAGCAACAAAATGATGTTTCAATTGACGGCTACAATTATTCGGATGGATCATTACAACTTCAGAACGTGGAAACTAAAAGTCATGAAGGTGATCCCAAGGGAATTGTTTCACAATCCATCATAGCAAAAAAAGGAAAGGCTTTGACTGGTAACATTACTGACACAAATATGAGAGAGAGTTTAAGGGTAGGCCTTAATCAACCTTTTGCTCTGGAGTCAGAAGTGAAGCATGCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTAGAGGATAGCTTCAGTCAGTTGCCATTACATGGTAAGCAGCATCACATCCAAGTAGATCAATCTCAATCAGTTGCTTCAATTAGTTCCACTCCCTCTATAACGGAGGAAGAGGTTGCTGCTTGTATAGAAGCAAAACCTTTGTTTGCAGATTACAAGAATGATTATGCCAGTTCTGTGAGTTCAATAGGGAATGCAGTTGACACCTTTCTTATTCAACCCGGAAGCCTTATGATGAATGATCAATCTTCAGAACCCATTTCCACTACAAATTCAGGATTGAAAACACAGGGATATAATAATCTCAGTTGCATTTCTGATCTGGAAGTTTACCAAAGAAACCTACTTTTGGGAGATGAGGCAGCTTCTGCACCTTTGGACGAGGACTTGCATTTCTATTGGCTACAAGGTGAATGCCATAATATGAACTTCGGTCTGCAGAATATAGGGATGTCTGAATATTATGATCCAGGGCTTATTACAGAAGCTCCAACCCACTTATATGATTCAGCTGATTACTCAGTTATAGATCAAGGTCTATTCATAGCATGA 1746 0.3958 MDNNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESLESFESIHLMRNGSEQSDDGNLFAIEDVTSTKKRKDADNKHDDKECLDPSSAKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGMKHSDLSSKDLGSFGFQNSVNKQQNDVSIDGYNYSDGSLQLQNVETKSHEGDPKGIVSQSIIAKKGKALTGNITDTNMRESLRVGLNQPFALESEVKHAVFDCSMPTQYSWTEVPHMQLKEEHKSLVHLEDSFSQLPLHGKQHHIQVDQSQSVASISSTPSITEEEVAACIEAKPLFADYKNDYASSVSSIGNAVDTFLIQPGSLMMNDQSSEPISTTNSGLKTQGYNNLSCISDLEVYQRNLLLGDEAASAPLDEDLHFYWLQGECHNMNFGLQNIGMSEYYDPGLITEAPTHLYDSADYSVIDQGLFIA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1776 581 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Ssu9g1776 581 Gene3D - 18 198 - -
Ssu9g1776 581 SUPERFAMILY CheY-like 17 150 IPR011006 -
Ssu9g1776 581 CDD REC_typeB_ARR-like 20 134 - -
Ssu9g1776 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 556 IPR045279 GO:0009736
Ssu9g1776 581 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Ssu9g1776 581 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Ssu9g1776 581 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Ssu9g1776 581 Gene3D - 199 259 - -
Ssu9g1776 581 SMART REC_2 18 130 IPR001789 GO:0000160
Ssu9g1776 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 556 - -
Ssu9g1776 581 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1776 Ssu-Chr9 55064489 55068249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1776 14 266 Response Regulator Gene Family AT2G25180 55.303 7.62e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu9g1776 Response_reg 1.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1776 - K14491 gmx:100797421 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1776 9 55064489 55068249 Ssu5g2280 5 65070802 65075274 PCT