Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1775 ATGTGGCAAAAGCAGCCCAATAATTCTTCTTACAGTGATTCTGTTAAGGCTCTCGAAGATGATATACAACATGCCAATACCCTGGCATCAGCACTTCCTCGAGATTATGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCTCCTCTTTTCTTGTACTTGATTGAATGGTTGGATTTTAGTTGTACAGATACTTTGCCCATGTATTTGGGCTTACTCCACATACTTACTTTCAATGTATACGCTGATGGAATGCCATCTATTTCCTCAAGAGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTACTTCAAGGCGAGTTTAATAGTGATCAAAGCAACAGTTGTGCAGAAGTGAGCAGAAAGAGGCTTGAAAAGGTTCTCAATAAAGATCTAGAGGGAGATGAGGAATGTGGCATATGTATGGAAAACAGAATGAAGATGGTTCTGCCTAATTGTGGACATTCTTTGTGCATTAGATGCTTCCATGATTGGTATATGAGGTCAGAATCATGCCCATTTTGCCGCGGAAGCCTCAGGAGGATCACTCCTACAGATTTATGGGTAGTTATCGGCAACAGTGATGTGGTTGACAGGATTACCATTGCAAAGGAGAATTTAAGACGTCTGTACCTTTACATTGACACTCTGCCTCCAATCATACCGGATACCCATTTATATACATTCAATTACATGCTATAA 732 0.3934 MWQKQPNNSSYSDSVKALEDDIQHANTLASALPRDYDGNYFQMKLSYSPFAPLFLYLIEWLDFSCTDTLPMYLGLLHILTFNVYADGMPSISSRERKATIKEFYAVIYPSLRLLQGEFNSDQSNSCAEVSRKRLEKVLNKDLEGDEECGICMENRMKMVLPNCGHSLCIRCFHDWYMRSESCPFCRGSLRRITPTDLWVVIGNSDVVDRITIAKENLRRLYLYIDTLPPIIPDTHLYTFNYML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1775 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 196 IPR013083 -
Ssu9g1775 243 SUPERFAMILY RING/U-box 136 192 - -
Ssu9g1775 243 SMART ring_2 148 185 IPR001841 -
Ssu9g1775 243 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 4 243 - -
Ssu9g1775 243 Pfam Zinc finger, C3HC4 type (RING finger) 145 190 - -
Ssu9g1775 243 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Ssu9g1775 243 PANTHER RING FINGER PROTEIN 41, 151 4 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1775 Ssu-Chr9 55051007 55052987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1775 112 225 C3H Transcription Factor Family AT2G20030 29.921 1.35e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1775 - - gmx:100805014 462.225