Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1759 ATGGTTTCCCGGAGCATTAATGCCTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCCAGTTGGGAAAAGAACCGCAAGCGTTTAGCAGAGTGTGCCATTGGGTTTGGTAAGCATGCAATTGGAGGAAGGGATGGTAAAATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAACCCCAAGCCAGGCACACTGAGATATGGTGTTATCCAAGAGGAGCCATTGTGGATCATCTTCAAGCGTGACATGGTGATCAAGCTGAAGCAAGAGCTTATGATGAATTCTTTCAAGACTATTGATGGTAGAGGAGCAAATGTACACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGACCAACATTATCATCCATGGGATTAACATCCATGACTGCAAACGGGGAGGGAATGTCTATGTGAGGGACTCCCCTACACATTATGGGTGGAGGACTCTCTCGGATGGGGATGGGGTGTCAATCTTTGGTGGGAGCCATGTTTGGGTGGACCACTGCTCTCTCTCCAATTGCCGTGATGGGCTAATTGATGCCATCCATGGATCCACAGCCATCACCATATCCAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGACACTTTCACGAGGGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTCGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTGGTGAATAATGACTACACCCAATGGAAAATGTATGCCATAGGGGGAAGTGCTGCCCCAACTATCAATAGCCAAGGCAATAGATTTCTTGCTCCCAATGACAATACCTTCAAAGAGGTGACAAAGCGGGAGGATGCACCACAGAGCAAGTGGAAGAATTGGAATTGGAGGTCTACGGGAGATTTGATGTTAAACGGTGCGTTTTTTACGGCATCAGGAGGAGGTGCATCTTCAAGCTATGCGAGAGCATCCAGTTTGGCAGCAAAACCATCTTCCCTTGTCAGTTCTATCACGGCATCAGCTGGATCACTTAGATGCAGAAAGGCGTCACACACACTGAAAGGAGCATCTTTTTTTTACTGCAGGAGCATTAATGGGTCAAGGAGAAACTTGGGGTATTTTTCTTGCGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCATCTGGGAAAGGAACCGCAAGCGCCTAGCCAATTGTGCAATTGGGTTCGGCAAGCATGCCATTGGTGGGAGAGATGGCAAACTATATGTGGTCACTGACCCTAGTGATCACCCAGTGAACCCCAAGCCAGGCACTTTGAGACATGCCGTTATTCAACAAGAGCCTTTGTGGATCATTTTCAAGCATGACATGGTGATCAAGCTACACATGGATCTCCTCGTCAATTCCTACAAAACGATTGATGGAAGAGGAGCAAATATCCACCTTGCTGGAGGGCCTTGCATTAAAGTGCACAAGAAGACCAATATCATAATTCATGGCATACACATCCATGATTGCAAACGGGGTGGCAGTGGATACGTGAGGGACTCTCCTAACCGACGTAGCTGGAGGGCAAGGTCGGGTGGTGATGGGATAACAATCTTCGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAATTGTTTTGATGGCCTAATTGATGTTGTTCATGGGTCAACGGCCATCACCATTTCCAACAATTACATGACACACCATAACAAAGTCATGCTCTTGGGCCACAGTGATTCCTATGCAGATGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAAGGGCTAGGGGGAAGAATGCCGAGGTGCAGGTTCGGATACTTTCATGTGGTGAACAACGACTACACACATTGGCTACATTACGCAATAGGTGGGAGTTCATCCCCAACCATATTCAGCCAAGGCAATAGATTTCTTGCTCCAGATGATGATGATCACAAAGAGGTGACCAAACattttaaatcatcaaagaGTGAGTGGAGGAAATGGAATTGGAGGTCTGACGGAGATCTAATGTTGAACGGCGCCTTCTTCACACCGTCCGGAGCAGGAGCAACTGCTAGGTATGATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGTGCCTTCAATGACAGCAGGGGCTGGAGCGCTTAGATGCAAAAGGGGCTACCTATGCCATTAG 2238 0.4763 MVSRSINASRRNLAFLSCGTGNPIDDCWRCDPSWEKNRKRLAECAIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNVYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTQWKMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDAPQSKWKNWNWRSTGDLMLNGAFFTASGGGASSSYARASSLAAKPSSLVSSITASAGSLRCRKASHTLKGASFFYCRSINGSRRNLGYFSCGTGNPIDDCWRCDPIWERNRKRLANCAIGFGKHAIGGRDGKLYVVTDPSDHPVNPKPGTLRHAVIQQEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGANIHLAGGPCIKVHKKTNIIIHGIHIHDCKRGGSGYVRDSPNRRSWRARSGGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYADDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWLHYAIGGSSSPTIFSQGNRFLAPDDDDHKEVTKHFKSSKSEWRKWNWRSDGDLMLNGAFFTPSGAGATARYDKASSMAARPPMLVPSMTAGAGALRCKRGYLCH 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1759 745 PANTHER PECTATE LYASE 382 741 - -
Ssu9g1759 745 Pfam Pectate lyase 101 286 IPR002022 -
Ssu9g1759 745 Pfam Pectate lyase 480 661 IPR002022 -
Ssu9g1759 745 PANTHER PECTATE LYASE 3 366 - -
Ssu9g1759 745 SUPERFAMILY Pectin lyase-like 397 735 IPR011050 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 167 188 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 340 363 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 311 335 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 67 92 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 44 61 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 103 119 IPR018082 -
Ssu9g1759 745 PRINTS Pollen allergen Amb family signature 247 266 IPR018082 -
Ssu9g1759 745 PANTHER PECTATE LYASE 18-RELATED 382 741 IPR045032 GO:0030570
Ssu9g1759 745 SMART pbh1 132 175 IPR006626 -
Ssu9g1759 745 SMART pbh1 551 582 IPR006626 -
Ssu9g1759 745 SMART pbh1 507 550 IPR006626 -
Ssu9g1759 745 SMART pbh1 176 207 IPR006626 -
Ssu9g1759 745 Gene3D - 21 362 IPR012334 -
Ssu9g1759 745 Gene3D - 396 737 IPR012334 -
Ssu9g1759 745 SMART amb_all 95 292 IPR002022 -
Ssu9g1759 745 SMART amb_all 470 667 IPR002022 -
Ssu9g1759 745 PANTHER PECTATE LYASE 18-RELATED 3 366 IPR045032 GO:0030570
Ssu9g1759 745 SUPERFAMILY Pectin lyase-like 7 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1759 Ssu-Chr9 54886947 54898281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1759 314 744 Polysaccharide Lyase AT5G63180 64.286 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1759 K01728 - gmx:100801136 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1759 9 54886947 54898281 Ssu9g1759 9 54886947 54898281 ECH
Ssu9g1759 9 54886947 54898281 Ssu1g2319 1 65225492 65228135 ECH
Ssu9g1759 9 54886947 54898281 Ssu6g1461 6 23986948 23989908 ECH