Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1752 ATGGGAGAAACCGGTATCGTTGTCCGGTTCCCGGGTAGCTTAGACCCCAGAGCCGAGGAGTTCAGACCCACCTTCGCTAGCCCCATTCAATGGTACGCTTTCCCTTTCCCTCTTCCCCCTCCGCCGCACCTCTCCACCTCGTCCACGCGCTCCCTCCTCCTCACTCCCGTCCCCATCACCACCGAGTCCGCGCTCAGGACCGAGCTCGAGGTCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGCATCGTCACCGTCCACTTCTACGACCTCCGCCATGCAGAAACCGCCTTCGCCGCCATTCGCATGCAGCACCACTATCCTCAATTCTACCCCGTTCCGGGCCTCCTCGCGGGCCGGCCCGTCTGGGCCCACTACGTCCTCCCCGCCTCCGACGCCCTCCCCGATGCTCACAACCAAGGCACCCTCGTCGTCTTCAACCTGGACCCCAACGTCTCCACCGAGAACCTTCGTCGAGTCTTCGAGCCTTTCGGTCCCATAAAGGAATTAAGAGATACCCCGTGGAAAAAGAACCAAAGATTCGTGGAGTTCTTTGACGTAAGAGACGCGGCCAAGGCCTTGAAACGCATGAACGGCAAGGAAATTCACGGGAAACCCGTTGTCATTGAGTTCAGTCGACCCGGAGGTCACACCCGCAAGTTCTTCCACTCCACCTTCTCCAAAACGCCTCCTCTCAATTTCAATGTTCCACCCTTTCCTCCTTCCCCGCGACGTCGTTTTGCCGCTCCTCGCTTGCATTCCTCTCAGCCACAATTATCTCACAAGAAATCACCCACAGCAAGTCCCAGCAAGGGTGCAGGTTCTATCAATGCGGCAATGGGGTCAATGACTTTGACCGGGGGAGTTGGAAATGGAAATGGAAATAGGGCTGACGAGCAGCACTCACATGGCACCCCGAAGAGGAATCTTGGCAGGAAGCACAATTGCGAGAGCACGGTGGGAAGCACGaagcaacagcaacaacaacaacaacttccTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACACGAAACTCGGTTTCTAATCCAAGAGGATGCCATTGTAGAGTCCGGTCCCAGAGATACTAGAACTACTGTCATGATCAAGAACATTCCCAACAAGTACAGTCAGAAGCTGCTATTAAACATGCTGGATAACCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCAGCAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTTGTGAACATGACATCCCCGGAGGCAACATTCAGGCTCTACAAGGCTTTCCATCTTCAACATTGGGAGGTATTCAATTCAAGAAAAATCTGCGAAGTCACCTATGCCAGAGTTCAGGGATTGGAAGCGTTGAAAGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGGTGGAGCATTACCTGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAGGGAACTGACGGAGCCACTTCCAATAGTGGGGAACAAGCAGCAAGCTATTCCGATTCCAAGTGGTGTTTCAAACAACTGTGATGAGAATGGGGGCGCTGGATGTGATGATGACGTGGTAAGCAGGAAAAGTGGCGGCGTGGGTGATGATGACACAGATGAAGAAGTGGGTGGAGGAGGCCTGGTTGCTTGTCAAGGTAGGGTAGTGTAG 1725 0.5328 MGETGIVVRFPGSLDPRAEEFRPTFASPIQWYAFPFPLPPPPHLSTSSTRSLLLTPVPITTESALRTELEVFGDVRALQTEALRHGIVTVHFYDLRHAETAFAAIRMQHHYPQFYPVPGLLAGRPVWAHYVLPASDALPDAHNQGTLVVFNLDPNVSTENLRRVFEPFGPIKELRDTPWKKNQRFVEFFDVRDAAKALKRMNGKEIHGKPVVIEFSRPGGHTRKFFHSTFSKTPPLNFNVPPFPPSPRRRFAAPRLHSSQPQLSHKKSPTASPSKGAGSINAAMGSMTLTGGVGNGNGNRADEQHSHGTPKRNLGRKHNCESTVGSTKQQQQQQQLPRSRHWKGKQAKKHETRFLIQEDAIVESGPRDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQQQQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATFRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEVEHYLPVVFSPPRDGRELTEPLPIVGNKQQAIPIPSGVSNNCDENGGAGCDDDVVSRKSGGVGDDDTDEEVGGGGLVACQGRVV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1752 574 SMART rrm1_1 146 214 IPR000504 GO:0003723
Ssu9g1752 574 PANTHER RNA BINDING PROTEIN 37 528 - -
Ssu9g1752 574 MobiDBLite consensus disorder prediction 304 318 - -
Ssu9g1752 574 MobiDBLite consensus disorder prediction 536 564 - -
Ssu9g1752 574 CDD RRM3_EAR1_like 370 474 IPR034458 -
Ssu9g1752 574 Gene3D - 317 479 IPR012677 -
Ssu9g1752 574 MobiDBLite consensus disorder prediction 319 340 - -
Ssu9g1752 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 218 IPR000504 GO:0003723
Ssu9g1752 574 MobiDBLite consensus disorder prediction 234 350 - -
Ssu9g1752 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 211 IPR000504 GO:0003723
Ssu9g1752 574 Gene3D - 139 225 IPR012677 -
Ssu9g1752 574 SUPERFAMILY RNA-binding domain, RBD 146 451 IPR035979 GO:0003676
Ssu9g1752 574 Pfam RNA recognition motif 2 370 483 IPR007201 -
Ssu9g1752 574 PANTHER TERMINAL EAR1-LIKE 1 37 528 - -
Ssu9g1752 574 MobiDBLite consensus disorder prediction 257 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1752 Ssu-Chr9 54820607 54823114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1752 140 245 Eukaryotic Initiation Factors Gene Family AT4G34110 30.172 2.78e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1752 - - vra:106755897 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1752 9 54820607 54823114 Ssu9g1752 9 54820607 54823114 ECH