Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1743 ATGGCAGTGTTCACATTCATCCTGCGCAAATCCGGCGACGAATGGACGGCAGAGCAATATTCCGGCGACATTGAGGAGTCGTCTCCGTCCACCTTCGACATCCAAAGGAAGCTCGTTAAGGCCGCCCTCGCCGCCGATTCCTCCGGCGCCGTTCAGTCCTCTTTCTCCGTCGTTTCCCCGTCCTCTGCCGTCTTCCAGGTGGTTGTGGGTGGTGCAGTATTCGTTGGAGGTGGTGTAGCTGCAGCAGCTGCTCCTGCAGGAGGTGCTGCCTCAGCAGGAGAGGCTGCCCCGGCTgcagagaagaaagaagaaaaagtcgaggaagaggaggaggacGATGATTTGGGGTTGTCACTCTTTGATTAA 366 0.5164 MAVFTFILRKSGDEWTAEQYSGDIEESSPSTFDIQRKLVKAALAADSSGAVQSSFSVVSPSSAVFQVVVGGAVFVGGGVAAAAAPAGGAASAGEAAPAAEKKEEKVEEEEEDDDLGLSLFD 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1743 121 Pfam 60s Acidic ribosomal protein 70 120 - -
Ssu9g1743 121 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 121 IPR044252 GO:0003735|GO:0005840
Ssu9g1743 121 MobiDBLite consensus disorder prediction 105 121 - -
Ssu9g1743 121 MobiDBLite consensus disorder prediction 89 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1743 Ssu-Chr9 54712588 54714047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1743 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 63.235 1.17e-26 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1743 K02942 - jre:109022163 81.6481