Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1740 ATGGGTCTCTCAAACTTCCCAAGTGCATCTGAAGGGGTGCTACACGTGCTCGTGATGAACACAGTTTTATCAGTGGCTGTGTTGAAGAACATATTTAGATCCATGCTGCAAGTAGTTGGTGGCAGTGGTAATCAAACCACTTCCTCTTACTCTCCCAACATTGAACAAGAGTCCCATGAAAGTTCACGGGAAAGGAGGGTGTCAATAACTCGGTACAAGTCATTGTGCCACGACAGGTCCAGCATAGGAAGAAGCAGTAGCAGTGGATGGAGGGGTGTGGCCATGGTGGAGTGCTGCGTGTGTCTCTCTGGTTTTGAAGCCAATCAAGAGGTGAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGCTGCTTAGACAAATGGTTCGATAACAAACACACCACGTGCCCCATGTGTCGTTCCATGGACTAG 432 0.4861 MGLSNFPSASEGVLHVLVMNTVLSVAVLKNIFRSMLQVVGGSGNQTTSSYSPNIEQESHESSRERRVSITRYKSLCHDRSSIGRSSSSGWRGVAMVECCVCLSGFEANQEVSELPCKHYFHRGCLDKWFDNKHTTCPMCRSMD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1740 143 SMART ringv_2 97 140 IPR011016 GO:0008270
Ssu9g1740 143 MobiDBLite consensus disorder prediction 42 63 - -
Ssu9g1740 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 143 IPR013083 -
Ssu9g1740 143 PANTHER F21J9.24-RELATED 1 142 - -
Ssu9g1740 143 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Ssu9g1740 143 CDD mRING-H2-C3H2C2D_ZSWM2 97 140 - -
Ssu9g1740 143 PANTHER - 1 142 IPR044249 -
Ssu9g1740 143 SUPERFAMILY RING/U-box 97 141 - -
Ssu9g1740 143 MobiDBLite consensus disorder prediction 42 56 - -
Ssu9g1740 143 Pfam Ring finger domain 97 140 IPR001841 -
Ssu9g1740 143 SMART ring_2 98 139 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1740 1 141 C3H Transcription Factor Family AT2G04240 35.443 1.76e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1740 K16285 - gmx:100811790 196.438