Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1732 ATGATGACTTTCCGTCCTAGAAAACTATTTCATCTGTACATTGGTTCAAGTGATGCTACCATGGCGCGGAGAACCAATTATAGCCCAACACCTTCGCCTCTTCACTCACCTGCAGTCTTAGTGCCACTTTTTGATGGAGATCACATGAATCAAAACCATGTACTTATCATTATGATAGTCATAGCTAGCACAGCTAGCGTAATTATGTTTCTCATCGCCTTGTCCAAAATCCTAAGGTACTATTATTCAAGGAGATACAACGTTGACAGAAGAAACCCACCAATATTATTCGACATTCGTGGAGATTTTCCCTTTTCTGATGACGAGGAACAAGAACAAGCCGTTAGGCACCACATATGGCTCATCCCCACAGAGGGTCTCCAACAATCAATCATAGACTCCATCACAGTATGCAAATACAGAAAAGATGAAGTGTTGATAAAAGAAACCAAGTGTCTTGTTTGCCTCGGGGAGTTTCAACAAGAAGAGAGTCTCAGACTTTTGCCCAAGTGTTACCACTCTTTTCACGTCCCTTGCATTGATACTTGGTTGAGATCACATAGAAGTTGTCCCTTGTGCCGTGCCCCTATTGTGCACGATGCTGCTAGTGTTGGTGGTGGCACTGAGACAGATTCAAGTCTTTCTGATACGAACGAAGACATAGAAGAAAGTGAGAGTGGTGGAGTGAGGCCGGTTGGAGATGAAGAATATTCTAGTGAAGAGGGGAGGGATGATGGGATTCAAGTTCTGCCTCAATGTGACGAGGTGAGGGGCCATTcttcaattctaattggttCTGCTTCTGCTGTTAGTGCACAAGAGTTTGAAGATGAAATAGAACCCATGAAGAGGTCTGTCTCCGTGGATTCATCTTCTGCTTCAATGGTATTGAGTGATGTGTTGGATTTAAATTTGGATATAGAAAGTTCAGACACCAACACCAACTTGGTGATTGAAAAGAAGGTTTCAGTTTCAAGTAATAACAAGGATGTTGCTATTGCTAAGCAAGGTTGCGAAAGTTCAGCCAATTACAAACAGAGGCATTCCTCATTGAGGTCCTCTTCACACAACACAAAATTCATATCTTGCAGACGTAGCAAGAACCAGAGTACAACTCTTCCATTGTGA 1128 0.4202 MMTFRPRKLFHLYIGSSDATMARRTNYSPTPSPLHSPAVLVPLFDGDHMNQNHVLIIMIVIASTASVIMFLIALSKILRYYYSRRYNVDRRNPPILFDIRGDFPFSDDEEQEQAVRHHIWLIPTEGLQQSIIDSITVCKYRKDEVLIKETKCLVCLGEFQQEESLRLLPKCYHSFHVPCIDTWLRSHRSCPLCRAPIVHDAASVGGGTETDSSLSDTNEDIEESESGGVRPVGDEEYSSEEGRDDGIQVLPQCDEVRGHSSILIGSASAVSAQEFEDEIEPMKRSVSVDSSSASMVLSDVLDLNLDIESSDTNTNLVIEKKVSVSSNNKDVAIAKQGCESSANYKQRHSSLRSSSHNTKFISCRRSKNQSTTLPL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1732 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Ssu9g1732 375 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 43 363 IPR044675 -
Ssu9g1732 375 CDD mRING-H2-C3H2C2D_ZSWM2 152 194 - -
Ssu9g1732 375 PANTHER RING-H2 FINGER PROTEIN ATL54 43 363 - -
Ssu9g1732 375 MobiDBLite consensus disorder prediction 204 245 - -
Ssu9g1732 375 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Ssu9g1732 375 MobiDBLite consensus disorder prediction 345 375 - -
Ssu9g1732 375 SUPERFAMILY RING/U-box 140 200 - -
Ssu9g1732 375 MobiDBLite consensus disorder prediction 223 237 - -
Ssu9g1732 375 Pfam Ring finger domain 151 194 IPR001841 -
Ssu9g1732 375 SMART ring_2 152 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1732 Ssu-Chr9 54574605 54575732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1732 55 198 C3H Transcription Factor Family AT1G72220 43.750 9.38e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1732 - K10664 gmx:102667611 489.574