Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1730 ATGAAGAAAGCCTTTCACCCGAACCCCAACCCCTACGCCACCCATCGCCGCCACAATTTCCACCGTCCGCCACCCCACGGCGGTTGGACTTCCCGCCCCGTCCCCCGTCAATGGAAGCCCCGGCTGCACCCTCACGCCCGCGTGGACCGCCCTCCGGAGCCCTATTTCACGGTGGAGCTCCGCCAGGGCCGCGGCCCCCTCCGCCGCGACGACGTCGAGGCCCTGATCGACGAGTGCGGGCACAAGCCGGATAGCTTCAGCTTCTACCCCGTGGACCACGTCGCCGCCGCGCTCAGCTACCGGCGGTGGGAGGAGGCGCGCGACGCTGTCGTGTGGTTCTGGGAGTCGCGGCTGGCGGACAAGCACGATTTCACCCCGGCGCTGGACTCCAACGTCGCGGTCGGGGGCGATCTGGAAGGTCGCCTGCGGACGCTGTTCGCAGGGCACGTGAAGGGCGTGATGGAGGGGAAGGAGGTGAAGCGGTGGGTGGAGGAGAACGAGCGGTTGTCGAAGGAGATTGCGAAGGTTTCGGGTTCGCTGAGTAAGCCCTTGCGAATTGGCACGCACAACCAACTCatggagaagaagaaagggCTTGTTGATGAGAAGAGTCTGGTTGAGAGGAGGATTAAGGAGTTTGAGGCTGCAATGGAGTGTGTGTTGAAGTATTTGGAGGAAGAGGATGATGGGAAAGGTGGTGAGGGTGTGAATGTGTTTAGGTTTGATGGAAATTTTGACTGGAAGCGGATTCAATGCGTGATCAACAGGGAGCGTCGGAGACTTGAGGATGGATTGCCTATTTATGCTTACCGGAGGGAAATTCTTCAGGAAATACATTTTCAGCAGATAATGGTATTAATCGGAGAGACAGGTTCTGGGAAGAGTACGCAGTTGGTACAGTTTCTCGCTGATTCAGGCATTGGTGCTGAAGAATCCATTGTATGCACTCAACCCCGCAAGATTGCTGCCAAATCATTGGCTCAAAGGGTCCAGGAAGAAAGCAGGGGATGTTATGAAGGCCATTCAATCAAATGTTGTTCTACATTTTCGTCCTCTCATGAGTTCGATTCCAGGGTAACATTCATGACAGATCACTGTTTATTGCAGCATTACATGAGTGATAAGAATTTGTCTGGGGTCTCATGCATCATAATTGATGAGGCTCACGAAAGGAGCTTAAATACTGATCTACTGTTGACTTTGTTAAAGAATTTACTTGGTAGGAGGGTTGAAATGCGGCTAATCATTATGTCTGCTACAGCTGATGCAAAACAGCTATCTGATTACTTTTATGGTTGTGGAATTTTTCGTGTGCTTGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTTCTGACTATGCAAAACATTCTGATTCTGCTGTTGTTGCCTCGTATGTTTCTGATGTTGTCAGAATGGCAACTGAGATTCACAAAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCGCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTCCCTCTGCAGTCGCTTTGCCCTTGCACGGAAAACTTTCATCGGACGAGCAATTTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACTAATCTTGCGGAGACGTCACTTACAATTCCGGGTGTTAAGTATGTGATAGATTCTGGGTTTGTTAAAGACAGCAGATTTGATCCTGGGAGTGGGATGAATGTACTCAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGTGCCTGGTATGTGCTATAGACTGTACTCAGATGCCGATTATCAGTCTATGGAACTAAATCAAGAACCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCTATTGAGATGGCAATCAGGAATCTAATTCAATTAGGAGCCATTGAACTGACCAATAACGTTCATGAATTAACTTCTGAGGGTTGGTGCTTGGTTAGAATGGGAATTGAGCCTAGGCTTGGTAAACTTATTCTTGGCTGTTTCAAACATGGTTTGGGTAGAGAAGGGATTGTCCTTGCTGCTGTGATGGCTAATGCTAGTAGCATTTTTTGCAGAGTTGGTAATGAATTTGATAAACAAAGGTCTGACTGTCTTAAAGTGCAATTTTGTCATTGTGATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCTAAATCCATCAGAAGGTGCCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACATGACCTTGTCACTCCAAGTTACTGGCGGTGGGACCCTTGTATGCCCTCTAACCATGATAGGAATTTGAAAAGGGTTATACTGTCCTCACTTGCTGAAAATGTAGCCATGTACTCTGGCTCTAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACACGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCAAGTTGGGTGGTTTTTGGTGAGCTTCTTTCAGTTTCTAATCAATATTTGGTCTGTGTAAGTGCGTTTGACTTTCAATCATTACACAGCCTTTGCCCTGCTCTCCTGTTTGATGTATCCAAAATGGCAGAGCGTAAATTACAAATGAAGACACTGACTGGTTTTGGCTCTATTCTTCTGAAGAGATTTTGTGGAAAAGCCAACAGTAATTTGCTTGGTCTTGTTTCTCATATAAGGAAAGCTTGTGCGGATGAACGCATCTTCATTGAAGTGCAAGTTGACCAGAATGAAATCCACTTATATGCTACTTCAAATGATATGGATACAGCACTTGGGTTGGTTAATGATGTTTTAGAATATGAGAGAAAGTGGTTACGTACTGAATGTATGGATAAGTGTTTGTATCTCCGGTCTGGTTTCTCTCCAGCGGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGtgtcatccaaacataaatgcAATTGATGACAAGGAGCTCTTAATGTTTTTTGAGAAGAATACCTCTGGTTGCGTTTGTGCTGTGCACAAATTTGCAGGCAATATGAAGGATGAAGATAGAGAAAAGTGGGGTAGGATAACATTTCTGTCCCCTGATGCTGCCAGAAGAGCTGCTGAGCTAGATGGACAGGAGTTTTGTGGCTCCTCCTTGAAAATTGTTCCTTCACAACTCGGAGGggataaaacattttcattccCCGCTGTTAAAGCAAAAATTTGTTGGCCTCGTAGGCTTAGCAAGGGATTTGCCGTTCTTAAATGTGATATGAatgatgtcaattttatcttgAAAGATTTCTATAACCTTGCAATAGGAGGAAGGTATGTTCGATGTGAAATTGGCAACAGGAGCAGGGACAGTATTCTGATAAATGGTCTTGACAAAGAGCTCTCAGAAGCTGAAATATTGGATGTACTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCTGTTAATAATCCACCATGCAGTGTTTGTGAAGAGGCACTCCTAAAAGATATTTTCCCTTTTATGCCCAAACGAAACCCACATATTATTTCTTGCCGAGTTCAGGTGTTTGCACCTGAGCCCAAAGATGCTTTCATGAGAGCTTTAATCACTTTTGATGGAAGGTTACATTTAGAGGCAGCAAAAGCATTGGAGCAAATTGAAGGAAAGGTGTTACCTGGTTTTCTTTCATGGCAAAAGATAAAGTGTCAGCAGTTGTTTCATAGCTCCTTGACATTTCCTATTCCAGTGTATCGTGTGATAAAGGAACAACTGGATAAAGTACTGGCAAGCTTCCGCAATGTAAAAGGTCTTGAATGGAACCAGGACAAGACAGTTAATGGTTCCCACCGAGTGAAGATAACGGCCAATGCTACAAGGACAGTGGCAGAAGTTAGGAAACATCTGGAAGAACTATTGAGAGGGAAAACCATTGACCATGACAGCCTCACCCCTGCAGCTCTCCAGCTCATGTTTTCCAGGGATGGCATTAGTCTTAAAAACTCATTGCAGCAAGAGACAGGAACTTACATTCTTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCACGAGAAGGTGATTCAATCCCTCCTTTCTCTCCATGAAGGAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGATTTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTCCGTGGACTGAAAGAGAAGGTACCTGGGGTAGATACTTCACTTAACATACGCCGCCAGGTAATCATTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGaggaaataatttttgagattgCTCGTTCAAGCCATCATTTGGTTGGGAGAGTTGACACTGGACCTAGTTGTCCAATTTGCTTGTGCGAGGTTGAGGATGGATTCCGGCTTGAAGGCTGTGGTCATTTGTTCTGCCGCTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAATCAAGGCAGTTTCCCAATATGTTGTACTCACACGGGCTGTGGAGATCTCATTCTGCTTACAGATTTGAAATCTCTCTTAATAGGTGATAAGCTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCAACGAGTGGGGGGATTTACAGGTTTTGCCCTTCTCCTGACTGCCCCTCAATTTATCGAGTTGCGGGTCCTGGGACTGCTGGTGAACCGTTTGTGTGTGGTGCCTGTTATTCAGAGACTTGTACAAGGTGCCACTTAGAGTATCATCCCTACCTTTCATGTGAGAGATATAAAGAATTCAAGGAAGATCCAGACTCATCCCTGAAGGAGTGGTGCAGAGGGAAAGAACAAGTTAAGAGCTGTCCGGGGTGTGGGTATGTAATTGAGAAGGTTGATGGGTGCAACCACGTGGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGTTTAGAGTTCTTTAGTAGTAGTGATGAATGTTACAATCATTTGAGAAATATACACATGGCCATCATATAA 5187 0.4457 MKKAFHPNPNPYATHRRHNFHRPPPHGGWTSRPVPRQWKPRLHPHARVDRPPEPYFTVELRQGRGPLRRDDVEALIDECGHKPDSFSFYPVDHVAAALSYRRWEEARDAVVWFWESRLADKHDFTPALDSNVAVGGDLEGRLRTLFAGHVKGVMEGKEVKRWVEENERLSKEIAKVSGSLSKPLRIGTHNQLMEKKKGLVDEKSLVERRIKEFEAAMECVLKYLEEEDDGKGGEGVNVFRFDGNFDWKRIQCVINRERRRLEDGLPIYAYRREILQEIHFQQIMVLIGETGSGKSTQLVQFLADSGIGAEESIVCTQPRKIAAKSLAQRVQEESRGCYEGHSIKCCSTFSSSHEFDSRVTFMTDHCLLQHYMSDKNLSGVSCIIIDEAHERSLNTDLLLTLLKNLLGRRVEMRLIIMSATADAKQLSDYFYGCGIFRVLGRSFPVDIKYVPSDYAKHSDSAVVASYVSDVVRMATEIHKTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGFVKDSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTVPGMCYRLYSDADYQSMELNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLGAIELTNNVHELTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIVLAAVMANASSIFCRVGNEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSIRRCQDTILELETCLEREHDLVTPSYWRWDPCMPSNHDRNLKRVILSSLAENVAMYSGSNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSVSNQYLVCVSAFDFQSLHSLCPALLFDVSKMAERKLQMKTLTGFGSILLKRFCGKANSNLLGLVSHIRKACADERIFIEVQVDQNEIHLYATSNDMDTALGLVNDVLEYERKWLRTECMDKCLYLRSGFSPAVALFGSGAEIKHLELEKRSLSVDVCHPNINAIDDKELLMFFEKNTSGCVCAVHKFAGNMKDEDREKWGRITFLSPDAARRAAELDGQEFCGSSLKIVPSQLGGDKTFSFPAVKAKICWPRRLSKGFAVLKCDMNDVNFILKDFYNLAIGGRYVRCEIGNRSRDSILINGLDKELSEAEILDVLRTATSRRILDFFLVRGDAVNNPPCSVCEEALLKDIFPFMPKRNPHIISCRVQVFAPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGFLSWQKIKCQQLFHSSLTFPIPVYRVIKEQLDKVLASFRNVKGLEWNQDKTVNGSHRVKITANATRTVAEVRKHLEELLRGKTIDHDSLTPAALQLMFSRDGISLKNSLQQETGTYILFDRHNLNLRVFGSPNKVALAHEKVIQSLLSLHEGKQLEIHLRGRDLPPDLMKQMIKNFGPDLRGLKEKVPGVDTSLNIRRQVIILHGNKELKPRVEEIIFEIARSSHHLVGRVDTGPSCPICLCEVEDGFRLEGCGHLFCRLCLVEQCESAIKNQGSFPICCTHTGCGDLILLTDLKSLLIGDKLEDLFRASLGAFVATSGGIYRFCPSPDCPSIYRVAGPGTAGEPFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLKEWCRGKEQVKSCPGCGYVIEKVDGCNHVECKCGKHVCWVCLEFFSSSDECYNHLRNIHMAII 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1730 1728 CDD SF2_C_RHA 443 603 - -
Ssu9g1730 1728 SUPERFAMILY RING/U-box 1603 1657 - -
Ssu9g1730 1728 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 95 1470 - -
Ssu9g1730 1728 Pfam Zinc finger, C3HC4 type (RING finger) 1519 1555 IPR018957 GO:0046872
Ssu9g1730 1728 MobiDBLite consensus disorder prediction 1 38 - -
Ssu9g1730 1728 ProSiteProfiles TRIAD supradomain profile. 1515 1723 IPR044066 -
Ssu9g1730 1728 Pfam DEAD/DEAH box helicase 271 426 IPR011545 GO:0003676|GO:0005524
Ssu9g1730 1728 Gene3D - 442 614 IPR027417 -
Ssu9g1730 1728 SMART helicmild6 497 595 IPR001650 -
Ssu9g1730 1728 SMART ultradead3 263 448 IPR014001 -
Ssu9g1730 1728 Gene3D - 249 441 IPR027417 -
Ssu9g1730 1728 PANTHER ATP-DEPENDENT RNA HELICASE 1553 1644 - -
Ssu9g1730 1728 PANTHER ATP-DEPENDENT RNA HELICASE 95 1470 - -
Ssu9g1730 1728 Gene3D - 617 660 IPR042035 -
Ssu9g1730 1728 SUPERFAMILY RING/U-box 1673 1720 - -
Ssu9g1730 1728 SMART ha2_5 655 751 IPR007502 GO:0004386
Ssu9g1730 1728 CDD DEXHc_RHA-like 282 438 - -
Ssu9g1730 1728 Gene3D - 1629 1726 - -
Ssu9g1730 1728 Pfam Helicase associated domain (HA2) 656 750 IPR007502 GO:0004386
Ssu9g1730 1728 ProSitePatterns Zinc finger RING-type signature. 1535 1544 IPR017907 -
Ssu9g1730 1728 ProSitePatterns Zinc finger C2H2 type domain signature. 1703 1724 IPR013087 -
Ssu9g1730 1728 SUPERFAMILY RING/U-box 1518 1577 - -
Ssu9g1730 1728 Pfam Helicase conserved C-terminal domain 477 593 IPR001650 -
Ssu9g1730 1728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 635 IPR001650 -
Ssu9g1730 1728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1516 1594 IPR013083 -
Ssu9g1730 1728 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1553 1644 - -
Ssu9g1730 1728 Pfam IBR domain, a half RING-finger domain 1602 1651 IPR002867 -
Ssu9g1730 1728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 759 IPR027417 -
Ssu9g1730 1728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 439 IPR014001 -
Ssu9g1730 1728 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 381 390 IPR002464 -
Ssu9g1730 1728 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 819 899 IPR011709 -
Ssu9g1730 1728 SMART ibrneu5 1583 1651 IPR002867 -
Ssu9g1730 1728 SMART ibrneu5 1652 1716 IPR002867 -
Ssu9g1730 1728 ProSiteProfiles Zinc finger RING-type profile. 1519 1561 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1730 Ssu-Chr9 54558683 54565015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1730 1534 1710 C3H Transcription Factor Family AT2G31770 27.568 1.12e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1730 K12818 - gmx:100810008 3047.3