Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1729 ATGAAGAGACTTGGCACCTCAGATTCTTCCAGTGCTCTCATGACAATTTGTCCATCAACAGaggaacacAGTCCGAGGAACAACCATCACATGTATGGTAGTAGGGAGTTCCAATCGATGCTGGACGGAATCGACGAGGAAGGGTGTGTTGAAGAACCGGGGCATCAATCTGAGAAGAAGCGTCGACTAAGTGTAGATCAAGTCAAGGCTTTGGAGAAAAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCCGTTTGGTTCCAAAACCGTCGAGCTCGATGGAAAACCAAGCAACTGGAGAGAGATTACGGCGTTCTCAAAGCCAATTTTGATGCTCTTAAGCTTAACTATGACACCCTTAATCAGGACAACGAAGCCTTACGCAAGCAGATTAAGGAATTGAAATCGAGGCTACAAGAAGACAACACAGGAAGCGGTGTATCGGTGAAGGAAGAGATGTCGATGCCCGACACCGAAGACAAAACGATGGAGCAAAGTAAGAGCCACCCATCTTCTGAAACCTCCAATATTCCTTGTTCGGAGTCCGAGGATCACTTGAATTACGAGTGTTTCAACAACAGCGAATGTGTCGGAGCCGCATCGCTCTTACAAGTGGACTTCAAAGACGGTTCTTCCGACAGCGACTCCAGCGCAATCTTGAACGAGGACAACAGCCCCAAAGCCGCCATTTCCTCATCTGGGGTTCTCCAAACTCACCATCTCTTGCTGTCTCCCGAGTCTTCTCCCTTGAAATTCAATTGCTCCATATCGTCCTCGCCGTCCTCGATGAACTGTTTCCAGTTCCAGAAACCGTATCACGCGCAGTACGTGAAGATGGAGGAGCACAATTTCCTAAGTGCGGACGAGGCCTGCAATTTCTTCTCGGATGAACAAGCACCGACCCTGCAGTGGTACTGTCCGGACCAGTGGAGTTGA 987 0.4843 MKRLGTSDSSSALMTICPSTEEHSPRNNHHMYGSREFQSMLDGIDEEGCVEEPGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNQDNEALRKQIKELKSRLQEDNTGSGVSVKEEMSMPDTEDKTMEQSKSHPSSETSNIPCSESEDHLNYECFNNSECVGAASLLQVDFKDGSSDSDSSAILNEDNSPKAAISSSGVLQTHHLLLSPESSPLKFNCSISSSPSSMNCFQFQKPYHAQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1729 328 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Ssu9g1729 328 CDD homeodomain 59 115 IPR001356 GO:0003677
Ssu9g1729 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 320 IPR045224 GO:0003700
Ssu9g1729 328 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Ssu9g1729 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 320 - -
Ssu9g1729 328 Gene3D - 23 115 - -
Ssu9g1729 328 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Ssu9g1729 328 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Ssu9g1729 328 SUPERFAMILY Homeodomain-like 39 116 IPR009057 -
Ssu9g1729 328 MobiDBLite consensus disorder prediction 154 197 - -
Ssu9g1729 328 MobiDBLite consensus disorder prediction 1 31 - -
Ssu9g1729 328 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Ssu9g1729 328 Coils Coil 127 161 - -
Ssu9g1729 328 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Ssu9g1729 328 MobiDBLite consensus disorder prediction 170 184 - -
Ssu9g1729 328 MobiDBLite consensus disorder prediction 1 22 - -
Ssu9g1729 328 SMART HOX_1 57 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1729 Ssu-Chr9 54496023 54497527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1729 1 327 Homeobox Transcription Factor Family AT2G22430 46.761 5.92e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu9g1729 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1729 K09338 - gmx:100777924 489.574