Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu9g1720 | ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTCGGAGAGATGGACGGAGACATCGACCCTCACCATGACTCCGCCGACGTTGACATGTCCGCTGCCGACGACGACGCCGTCAAGGAGCTCGACGAGATGAAGAAGCGCTTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAGGAGATGGGCACTGTTCAAGATCCTGCTAGTTCAGATGCTTCACAGGCCAACAGGGAGGAGGCAGATTCGCGTTCTGTTTTTGTTGGCAATGTTGACTATGCATGCACACCAGAAGAAGTACAGCAACACTTTCAATCTTGTGGTACAGTGAACAGGGTTACGATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGATGCGGTTCAGGAGGCTCTTCTATTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAACGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTCATATGGGGTATCGCTTCAGGAGGCCATATCCTCCTCCTTATTTTTACTCCCCTTATGGATACGGAAAGGTTCCCAGGTTTAGAAGGCCAGGTCAATCCATGCCGTACTATTAG | 672 | 0.497 | MEEEEHEVYGGEIPDVGEMDGDIDPHHDSADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGTVQDPASSDASQANREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETDAVQEALLLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPHMGYRFRRPYPPPYFYSPYGYGKVPRFRRPGQSMPYY | 223 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu9g1720 | 223 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
Ssu9g1720 | 223 | Gene3D | - | 22 | 178 | IPR012677 | - | |
Ssu9g1720 | 223 | SMART | rrm1_1 | 96 | 167 | IPR000504 | GO:0003723 | |
Ssu9g1720 | 223 | MobiDBLite | consensus disorder prediction | 70 | 94 | - | - | |
Ssu9g1720 | 223 | PANTHER | - | 1 | 221 | - | - | |
Ssu9g1720 | 223 | SUPERFAMILY | RNA-binding domain, RBD | 83 | 194 | IPR035979 | GO:0003676 | |
Ssu9g1720 | 223 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Ssu9g1720 | 223 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 97 | 165 | IPR000504 | GO:0003723 | |
Ssu9g1720 | 223 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 95 | 171 | IPR000504 | GO:0003723 | |
Ssu9g1720 | 223 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 1 | 221 | - | - | |
Ssu9g1720 | 223 | Coils | Coil | 38 | 72 | - | - | |
Ssu9g1720 | 223 | CDD | RRM_II_PABPs | 96 | 166 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu9g1720 | Ssu-Chr9 | 54350688 | 54354798 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu9g1720 | 92 | 191 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.000 | 6.30e-09 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu9g1720 | K14396 | - | zju:107425313 | 343.969 |