Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1720 ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTCGGAGAGATGGACGGAGACATCGACCCTCACCATGACTCCGCCGACGTTGACATGTCCGCTGCCGACGACGACGCCGTCAAGGAGCTCGACGAGATGAAGAAGCGCTTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTTCGTGAAATGCAAGCCAAGGTCGAGAAGGAGATGGGCACTGTTCAAGATCCTGCTAGTTCAGATGCTTCACAGGCCAACAGGGAGGAGGCAGATTCGCGTTCTGTTTTTGTTGGCAATGTTGACTATGCATGCACACCAGAAGAAGTACAGCAACACTTTCAATCTTGTGGTACAGTGAACAGGGTTACGATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGATGCGGTTCAGGAGGCTCTTCTATTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAACGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTCATATGGGGTATCGCTTCAGGAGGCCATATCCTCCTCCTTATTTTTACTCCCCTTATGGATACGGAAAGGTTCCCAGGTTTAGAAGGCCAGGTCAATCCATGCCGTACTATTAG 672 0.497 MEEEEHEVYGGEIPDVGEMDGDIDPHHDSADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGTVQDPASSDASQANREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETDAVQEALLLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPHMGYRFRRPYPPPYFYSPYGYGKVPRFRRPGQSMPYY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1720 223 MobiDBLite consensus disorder prediction 19 38 - -
Ssu9g1720 223 Gene3D - 22 178 IPR012677 -
Ssu9g1720 223 SMART rrm1_1 96 167 IPR000504 GO:0003723
Ssu9g1720 223 MobiDBLite consensus disorder prediction 70 94 - -
Ssu9g1720 223 PANTHER - 1 221 - -
Ssu9g1720 223 SUPERFAMILY RNA-binding domain, RBD 83 194 IPR035979 GO:0003676
Ssu9g1720 223 MobiDBLite consensus disorder prediction 1 38 - -
Ssu9g1720 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Ssu9g1720 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
Ssu9g1720 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 221 - -
Ssu9g1720 223 Coils Coil 38 72 - -
Ssu9g1720 223 CDD RRM_II_PABPs 96 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1720 Ssu-Chr9 54350688 54354798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1720 92 191 Eukaryotic Initiation Factors Gene Family AT2G36660 28.000 6.30e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1720 K14396 - zju:107425313 343.969