Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1712 ATGTCCAAGTCCAAGCCTAACCCAAATCCAAACGCGGATCCGACCCGAATATTCCTCCCTCAGGATCCGAATACCACCGCGGACCCTCAGGTTCCGCTTCGGAACCTGTCCCTGGTTCGGACCAGATTGGATTCTCTGCAACGCTTCCTATCTCAATCCATCAACACCAACGCTCCCCTCACCGTCGATCAAACCGCCATGGTCTCCAATCAGATCGTCTCCGCCGTCCACCAAATCATCGTCAACGGCGCCGCCCTCGTCTCTTGCTCCCAAAACTCCACCGCCGCCGGAGCCTCCGCCGTCTCGCCGGATCCACCGCCGAAGAAACCAAAGCCGGAACCCTCCGCCGCCGATAAGGGCAAACGAGCACTCGATTCGAGACTCGAGCCCACGGAAGACGACGACGCCGGCGAAGACTTAGACGACGGCGAAATCGTGGAGCTCGACGCCGTGGAAATCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGCGACGCGAACCTGCGCATGCACATGCGCGCGCACGGGAACCAGTTCAAGACGCCGGAAGCACTTGCGAAGCCGTCGGAGGCGGCGCCGCGCCGCCGCGCGACGCGGTTCTCGTGTCCGTTCGAAGGTTGCAACCGGAACAAGCTGCACCGGCGGTTCCGGCCGCTGAAGTCGGTGGTGTGCGTGAAGAACCACTTCAAGAGGAGCCACTGCCCGAAGATGTACTCGTGCGAGCGGTGCCGCAAGAAGCACTTCTCGGTGCTCTCGGATTTGAAGAGCCACGTGAAGCACTGCGGAGAGGCCAGGTGGAAGTGCACGTGCGGGACCACGTTTTCGCGGAAGGACAAGTTGTTCGGCCACATGGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTTCGACCAAAGCGACAAAGGGAAACGAGTGGTGGAGGAAGACGAAGAGGACCCAATGTTGTTGATGAGTGAAAGTGAATTGGGTAATTGCTTTCTAGATGAAGACTTGCCGGAAGGgttctttgatgattttggCTCCATTGATAACTACTGTTTGCAGCAAGTGTTAGGGTTTCCTAGTAATTTGAAATGA 1095 0.5808 MSKSKPNPNPNADPTRIFLPQDPNTTADPQVPLRNLSLVRTRLDSLQRFLSQSINTNAPLTVDQTAMVSNQIVSAVHQIIVNGAALVSCSQNSTAAGASAVSPDPPPKKPKPEPSAADKGKRALDSRLEPTEDDDAGEDLDDGEIVELDAVEILAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPSEAAPRRRATRFSCPFEGCNRNKLHRRFRPLKSVVCVKNHFKRSHCPKMYSCERCRKKHFSVLSDLKSHVKHCGEARWKCTCGTTFSRKDKLFGHMALFEGHAPALAFDQSDKGKRVVEEDEEDPMLLMSESELGNCFLDEDLPEGFFDDFGSIDNYCLQQVLGFPSNLK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1712 364 MobiDBLite consensus disorder prediction 111 130 - -
Ssu9g1712 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Ssu9g1712 364 SMART c2h2final6 244 266 IPR013087 -
Ssu9g1712 364 SMART c2h2final6 159 181 IPR013087 -
Ssu9g1712 364 SMART c2h2final6 206 239 IPR013087 -
Ssu9g1712 364 SMART c2h2final6 272 296 IPR013087 -
Ssu9g1712 364 MobiDBLite consensus disorder prediction 1 30 - -
Ssu9g1712 364 Gene3D Classic Zinc Finger 231 299 - -
Ssu9g1712 364 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 23 362 - -
Ssu9g1712 364 SUPERFAMILY beta-beta-alpha zinc fingers 156 182 IPR036236 -
Ssu9g1712 364 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Ssu9g1712 364 MobiDBLite consensus disorder prediction 96 142 - -
Ssu9g1712 364 Gene3D Classic Zinc Finger 159 182 - -
Ssu9g1712 364 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 362 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1712 Ssu-Chr9 54255377 54256471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1712 132 305 C2H2 Transcription Factor Family AT1G34370 59.669 1.62e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu9g1712 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1712 - - gmx:100809135 540.036