Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1696 ATGGATATGTACAATAATATTAGCATGATACCAGATTTGGTAGACCCGTGTAGTGATCACGAGCTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTCATCTAGCACTACTTCCTCAACTTACCCttcattctcttcttcttcttcttctcccaacTTCTCCTCAACAACATGGACCCCCCAAGTGTTCTCCTCAAGCTACGACCTAAAGTTTCCAAACCACGCTAGTCCCTCCAAGCTTAACCAACTCACCCCATCTCAAGTATTTCAGATTCAGGCCCAAATCCAGGTTCCACGAGCCCAGTTCCTAGGCCCAAAACCCGTTTCCATGAAGCACGTGGGTGCTCCTTCTAAGCCCACGAAGCTTTACCGTGGGGTGAGGCAGAGACACTGGGGCAAGTGGGTCGCTGAGATCAGACTCCCCAGGAACCGCACCCGTCTCTGGCTCGGTACGTTCGATACCGCAGAGGAAGCAGCTTTGGCATACGACAACGCAGCGTTTAAGCTAAGAGGAGAACACGCGAAGCTCAACTTCCCTCATCTGCGTCACCATGGAGCTCACGTGTACGGTGAGTTTGGGGACTACAAGCCTCTCCCCTCCGCAGTTGGTGCAAAACTCCAAGCTATTTGTGAAAGCTTGGTCAATTCGCAGAAACACCAAGCGAAAGCAGAAGATACAAAGGTTAAGACACACAAGACAGAAACAGAAACATCGACCCAAACATGTTCTCCCTTGTCGGATGAATATTCTTCTGCGGGTTCCTCTTCGCCTGAATCCGATATTACTTTCTTGGATTTCTCGGATTCTTGTGGAACGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCCGTGGAGATTGATTGGGCAGCTCTATCGGAGTCGTGA 891 0.477 MDMYNNISMIPDLVDPCSDHELMKALEPFMKSDSSSTTSSTYPSFSSSSSSPNFSSTTWTPQVFSSSYDLKFPNHASPSKLNQLTPSQVFQIQAQIQVPRAQFLGPKPVSMKHVGAPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDNAAFKLRGEHAKLNFPHLRHHGAHVYGEFGDYKPLPSAVGAKLQAICESLVNSQKHQAKAEDTKVKTHKTETETSTQTCSPLSDEYSSAGSSSPESDITFLDFSDSCGTDNLGLDLEKYPSVEIDWAALSES 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1696 296 MobiDBLite consensus disorder prediction 222 261 - -
Ssu9g1696 296 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Ssu9g1696 296 MobiDBLite consensus disorder prediction 236 261 - -
Ssu9g1696 296 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Ssu9g1696 296 MobiDBLite consensus disorder prediction 31 56 - -
Ssu9g1696 296 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Ssu9g1696 296 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Ssu9g1696 296 Gene3D AP2/ERF domain 123 181 IPR036955 GO:0003700|GO:0006355
Ssu9g1696 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 292 - -
Ssu9g1696 296 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Ssu9g1696 296 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Ssu9g1696 296 CDD AP2 122 182 IPR001471 GO:0003700|GO:0006355
Ssu9g1696 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1696 Ssu-Chr9 53979788 53980678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1696 18 293 AP2-EREBP Transcription Factor Family AT1G78080 47.022 3.05e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu9g1696 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1696 K09286 - gmx:100815162 371.318