Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1681 ATGGAAAGAAACGGTGACGGAAAGGCTCAAGATTCAGAGCCTCTACCTCCCCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAGCAGCAGCAACATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCATCTGCGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCTTTGAAGCAGTTATTGGAGCTTATTGGTATGCGAGAAAATGCTTTCAGTGCTGTGGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTTTGCTGGGTCTACTCAAGTTCAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACTATTTTTGCTGTCTCTCAAGATGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTATGGGAGCAGCTGCAAAAGGGCCTGAAGAGTGGAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGCAGCACCGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTGGACATATTAATGAAGTTACTGACAACAGGGCAGTCTGGCACTTTAGCGAATGTGTGCTTTTTACTTGCTTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACGGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTCAGGGCTGAAGCAGCCGGTGCTCTTAAATGTCTATCTGCCCAGTGCAAAGATGCAGGGAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTTTAGCGAACATTTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCACCTACCCAAGCTGCTGACACATTGGGAGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTACCAGGGCATCAGATCCTTTGGTAGTTGAGCATACATTACTTGAACAATTTAAACCTCGCTTGCCATTCCTTGTGCAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATACTGTCAATTAAACTTGCAAATTCTGATGCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTATGGTGTGCACTTCAAGGCCGCGAAGGAGTTCAGCTGTTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTCCTTTGCCTTCTATctaatgaaaatgatgaaagtAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACAATCCTCAGGAACCTATGCAATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCCGTTCCTGCATTGCTGTGGCTGTTGAAGAATGGAAGCCCAAATGGAAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGAtacaatgataaaattattgagCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATCTGCTCTGGCGGGAATTTTCGAAACGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCTGAGAGTATCTTAATGGAGTCCTCGCACTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGCTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTGCACTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAAGTCATCTTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCTGCAGCAGCAATTGCTCGCCTCTTGCATTCTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCATGCTGGTACTCTTCTTGCATTAGTTTCTCTCTTAGACTTTGCTGTCAATGGACCTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGTTGTCCAGGTCAGAAGAGACCGGTGCACACAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATAAGCCCAATAGTTCTGTCTATTGCTGATTCGACGCCCGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTTTGTTCTGGGAGACACTGTTGTTACTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTAAAAATGTAAAGGTCAAAATTGGAGGAGCTGCTGTTCTTATTTGTGCTgctaaagtaaatcatcagaggcTGGTGGAGGATCTCAATTTATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTTGTCGATATGTTTATTTCTTCACAGGCTACTTTGGATAATCACGGTAATGACAGCAGGGAAGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAACACTGGCACCGCTACTATTTCTGGTGCCAACTTAGCTATATGGTTACTGTCTGTTCTTGCTTGCCAtgatgaaaaaagtaaaattgcaATAATGGAGGCTGGAGCGATTGAGGTTCTCACTGACAGGATTGCAAATTGTTTCTCACAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACCATGAAATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGCAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTTCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCGGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCAGGAGCGCCATTTTTAGCACTTGGGTTTTTGACTCAGCTTGCTGTAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGGGTCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACAGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAGTCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTCCTGCGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCTATTGCTGCATTAGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTTTCATCAGATTTTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGTCTACTTTATGGTAGGAATTATGTACTTCATGAGGCCATTTCCAGAGCTCTAGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAGAGCATGCTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCTGCTTGTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCAGCTGCTAAAGTAGTTGAACCCCTGTTTATGTTGCTGACAAGACAAGAATTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGACTTCTCACCAAGCTATTGAACCTCTTATTGCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAAGGTCCAGTGACGCAACAGGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTGGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGCGGGTGGTgttattgaaatttcaaaagttatattGCAAGCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCTAGTATTCTACAATTTAGTTCTGAATACTATTTGGAAGTTCCAATTGCTGTTTTGGTAAGGCTGCTTCGATCTGGCTTAGAAAGCACAGTTATTGGTGCGTTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCCATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTAACATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCTGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACTTTGGCTCTTGGTGATCTATTTCAAAATGAGGGTCTTGCTCGGACAAGTGATGCAGTATCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAGCCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCGGGTGGGGTTCAGGTTATACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCATGCTGCAATGTTTATtaaacttctattttcaaatcataCTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGATGAGTACCTTAAAGCcttaaattctcaatttagcaACTTCCCAAGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACGTCCTTAAAGACTGGCTCTGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGCCCAGCAGAAATTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTGCAATGTTTGCCGGGAACGTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACcaagGTGGTCTCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTACCTGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTTGTAATGCTAGGAGCAGTATCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCCaggaatttagaaatagaatttCAGTGGTCGAACAAGTAA 6405 0.4228 MERNGDGKAQDSEPLPPHSVLKMGLRERSSSSNMEDPDGTLASVAQCIEHLRQSSSSMQEKEYSLKQLLELIGMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKFSSAEGQVAAAKTIFAVSQDGAKDHVGSKIFSTEGVVPVLWEQLQKGLKSGNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILMKLLTTGQSGTLANVCFLLACMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKCLSAQCKDAGKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTRASDPLVVEHTLLEQFKPRLPFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWCALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSHCLAAIFLSIKENRDVAAIARDALPSLVALANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHSKRQVDYAVTDCVNHAGTLLALVSLLDFAVNGPSSTSEALEALAMLSRSEETGAHSKPAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPFVLGDTVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLICAAKVNHQRLVEDLNLSNLCANLVQSLVDMFISSQATLDNHGNDSREVISICRHTKEANDGKSNTGTATISGANLAIWLLSVLACHDEKSKIAIMEAGAIEVLTDRIANCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISFLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGFLTQLAVDCPSNKIVMVEAGVLEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSDFSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESMLDILHEAPDYLCAACAELLRILTNNASIAKGPSAAKVVEPLFMLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIALLDSPISAVQQLAAELLSHLLLEEHLQKGPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKAGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPIAVLVRLLRSGLESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLTSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVHAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSQFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEISRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1681 2134 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2012 2131 IPR035892 -
Ssu9g1681 2134 Pfam C2 domain 2013 2109 IPR000008 -
Ssu9g1681 2134 Gene3D - 316 631 IPR011989 -
Ssu9g1681 2134 MobiDBLite consensus disorder prediction 1 38 - -
Ssu9g1681 2134 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2134 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Ssu9g1681 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1179 1223 IPR000225 GO:0005515
Ssu9g1681 2134 Pfam Armadillo/beta-catenin-like repeat 506 545 IPR000225 GO:0005515
Ssu9g1681 2134 Pfam Armadillo/beta-catenin-like repeat 85 115 IPR000225 GO:0005515
Ssu9g1681 2134 SUPERFAMILY ARM repeat 1563 2011 IPR016024 -
Ssu9g1681 2134 SMART arm_5 548 588 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 117 157 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1167 1210 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1840 1880 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1212 1253 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1713 1752 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 75 116 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 799 841 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1464 1504 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1294 1335 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1422 1462 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 292 341 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 506 546 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1381 1421 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 249 290 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 714 752 IPR000225 GO:0005515
Ssu9g1681 2134 SMART arm_5 1549 1590 IPR000225 GO:0005515
Ssu9g1681 2134 Gene3D - 29 315 IPR011989 -
Ssu9g1681 2134 ProSiteProfiles C2 domain profile. 1994 2111 IPR000008 -
Ssu9g1681 2134 SUPERFAMILY ARM repeat 595 946 IPR016024 -
Ssu9g1681 2134 Gene3D - 1514 2012 IPR011989 -
Ssu9g1681 2134 Gene3D - 853 1153 IPR011989 -
Ssu9g1681 2134 SUPERFAMILY ARM repeat 1161 1347 IPR016024 -
Ssu9g1681 2134 SUPERFAMILY ARM repeat 1283 1591 IPR016024 -
Ssu9g1681 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Ssu9g1681 2134 Gene3D - 1347 1513 IPR011989 -
Ssu9g1681 2134 Gene3D - 632 852 IPR011989 -
Ssu9g1681 2134 Gene3D C2 domain 2013 2134 IPR035892 -
Ssu9g1681 2134 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2134 - -
Ssu9g1681 2134 Gene3D - 1160 1346 IPR011989 -
Ssu9g1681 2134 SUPERFAMILY ARM repeat 326 667 IPR016024 -
Ssu9g1681 2134 SMART C2_3c 2014 2110 IPR000008 -
Ssu9g1681 2134 CDD C2 2015 2105 - -
Ssu9g1681 2134 SUPERFAMILY ARM repeat 50 357 IPR016024 -
Ssu9g1681 2134 SUPERFAMILY ARM repeat 863 1142 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1681 Ssu-Chr9 53789176 53798633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1681 479 601 U-box Gene Family AT2G23140 41.935 4.99e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1681 - - gmx:100816765 3854.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2752 5 73231108 73241523 Ssu9g1681 9 53789176 53798633 PCT