Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1674 ATGACACCTCTCTCTAAGCTCTTCAATAAGCTTTGTGGCAAAATGATAGTCGTATTGGCATCCCTGTTAATAGAACTTATCATTCTCATTCAGAAACTAAGGTCACGTCCAATTAGCACCCGGCAATACCTCAAACTCATTGAAAAGAAGAACCCCACGATTTGCTACACCAAAAGATTGAAGGCAGTGCCCGCAGAGTGTAGGGTGTGCTTGTCCGAATTCGAGGAAGGGGAGAAGGTGAGGAAATTGAAATGCCAACACACATTTCATAGGGATTGCTTGGACAAGTGGTTGCAACAATATTGGGCAACGTGCCCACTTTGTAGGAAACAAGTGGTGCCTGATGATGTCGTGTTCAAACATCGCCAGCATCAAAATCAAGCAGAGGCGGGTTTTAATGGGAATGATGAGCACCGTCCGTATCTTTTATCCGCATTTCGTGGTAGCAACACTTTTCATAGATATCTCTGA 471 0.4416 MTPLSKLFNKLCGKMIVVLASLLIELIILIQKLRSRPISTRQYLKLIEKKNPTICYTKRLKAVPAECRVCLSEFEEGEKVRKLKCQHTFHRDCLDKWLQQYWATCPLCRKQVVPDDVVFKHRQHQNQAEAGFNGNDEHRPYLLSAFRGSNTFHRYL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1674 156 SUPERFAMILY RING/U-box 48 115 - -
Ssu9g1674 156 SMART ring_2 67 108 IPR001841 -
Ssu9g1674 156 CDD mRING-H2-C3H2C2D_ZSWM2 66 109 - -
Ssu9g1674 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 115 IPR013083 -
Ssu9g1674 156 PANTHER - 1 151 - -
Ssu9g1674 156 Pfam Ring finger domain 66 109 IPR001841 -
Ssu9g1674 156 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Ssu9g1674 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1674 Ssu-Chr9 53705597 53706067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1674 65 120 C3H Transcription Factor Family AT1G15100 57.143 2.94e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1674 K16282 - gmx:102668078 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2764 5 73339694 73340173 Ssu9g1674 9 53705597 53706067 PCT