Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1672 ATGGCCGATCACTCAGATTCTTCTCCTCTCGTTCCTCCCCTTCCCCTCTCTGACCCTTCCGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACTGATGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCCTTTGCTCACTGCACAACGTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCCGTTGATAGGAAATGGCGTACCCTGAAATTTCGATTTTTTGTCACCAGagacattttgtttatttttctgtcTGTCCAGCTTGTCATTGCTTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAACTGAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTCGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTACGATCGAAGAGTTCGCAATGATTTAGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGAGGTACTGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGATTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGCGTATTGGTGGCTACCATGGTAGGTCAACGGATATGGCAACGACATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTGGTTGAAGACGTTGATGGAGAGCTTACAGGATCTGATTGGTCTCCGCCATCTCTCCCACCTGAGCATGTTCAGCAGTTGAAAACATTGGGCCTGCTATGA 972 0.4403 MADHSDSSPLVPPLPLSDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAVDRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGTGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPSLPPEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1672 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Ssu9g1672 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Ssu9g1672 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Ssu9g1672 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Ssu9g1672 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Ssu9g1672 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 95 IPR013083 -
Ssu9g1672 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Ssu9g1672 323 SUPERFAMILY RING/U-box 29 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1672 Ssu-Chr9 53680960 53685941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1672 1 323 C3H Transcription Factor Family AT2G22120 85.185 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1672 - - gmx:100791777 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2766 5 73369234 73373903 Ssu9g1672 9 53680960 53685941 PCT