Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1671 ATGAATTCACCATCCCCGCAGTTTGTTTCCTCGAGAAGGATGGGCGTGTACGATCCTATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATTGATGAGGCAGACATGAAGTTAGATAGTCAGTCAGAGGATACTTCCCAAGGTATTCTGGGAGCACCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGAGAAGGTACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGATTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGGGAATGTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGAATCTGTAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGAAACTGGGTGAATGAGCAAAATAGACAAATCACGGAACTGAGAAATGCTTTAAATGCACATATTGGTGACATAGAGCTCAGGATTCTGGTAGATAGTATGATGAGACACTATGCTGAAATCTTTCGTATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAAACAACAGCTGAAAGATTTTTCCTGTGGATTGGAGGCTTTCGCCCGTCTGAGCTTCTAAAGGTTCTTGGTCCCCTGATTGAACCCCTGACAGAGCAACAACGGTTGGATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCGCAAGGTATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAGTTCATGGAAGGAACTTATATTCCACAGATGACTTCTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTCTCGAATACTTACAATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTAGGGGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAATAGACCCCGTGAACCTGCTTAA 1089 0.4426 MNSPSPQFVSSRRMGVYDPIHQISMWGEGFKSNGNLSASMPLIDEADMKLDSQSEDTSQGILGAPNKYDQEANKPTEKVQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAESVNSGITTFEMEYGNWVNEQNRQITELRNALNAHIGDIELRILVDSMMRHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAMEKLEALVSFVNQADHLRQETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1671 362 Coils Coil 97 124 - -
Ssu9g1671 362 Coils Coil 158 178 - -
Ssu9g1671 362 Gene3D - 76 126 - -
Ssu9g1671 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Ssu9g1671 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Ssu9g1671 362 MobiDBLite consensus disorder prediction 52 76 - -
Ssu9g1671 362 CDD bZIP_HBP1b-like 78 130 - -
Ssu9g1671 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Ssu9g1671 362 SMART brlzneu 74 145 IPR004827 GO:0003700|GO:0006355
Ssu9g1671 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Ssu9g1671 362 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Ssu9g1671 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Ssu9g1671 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Ssu9g1671 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1671 Ssu-Chr9 53633574 53637538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1671 1 362 Calmodulin-binding Proteins AT5G65210 69.565 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu9g1671 DOG1 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1671 K14431 - gmx:100793353 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2768 5 73419954 73423410 Ssu9g1671 9 53633574 53637538 PCT