Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1656 ATGGTTTCTAGAGAGCAAAAGAGAGTAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTATTACGAACTCTCATGCTCTAAACAAAACCTCGATCATAATAGATGCATCAAAGTATATCGAGGAGTTAAAGCAAAAAGTAGAGAGACTGAATCAAGACGTAGCCAATGCACAAACTTCAAGTGACCACCAGAATACTTTGCCTATgGTTACAGTAGAAACCTTAGAAAAGGGATttcttataaatgtttattcagCAAAGAGCTGCCCCGGTCTGCTTGTTTCCATATTGGAGTCATTTGAAGAGATGGGTCTTAATGTGCTTGAGGCTACGGTTACTTGTACGGACACCTTTCGATTTCATGCTGTTGGAGGAAAAGTAAGACACAATATtgtaatcataaatttatattatagatGCTTTCTAGCTAGTTCAATATGTCATTCAGTGTCTCTCTTTTCCCTCCCATTACTCATATATTTTTGTAGGTCACATGCGTTGTCcttgtatatataa 516 0.3566 MVSREQKRVALHEKLQLLRSITNSHALNKTSIIIDASKYIEELKQKVERLNQDVANAQTSSDHQNTLPMVTVETLEKGFLINVYSAKSCPGLLVSILESFEEMGLNVLEATVTCTDTFRFHAVGGKVRHNIVIINLYYRCFLASSICHSVSLFSLPLLIYFCRSHALSLYI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1656 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 64 IPR036638 GO:0046983
Ssu9g1656 171 Coils Coil 33 60 - -
Ssu9g1656 171 PANTHER TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN 1 128 - -
Ssu9g1656 171 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1656 Ssu-Chr9 53413570 53414754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1656 11 122 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.645 2.73e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1656 - - gmx:100814138 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1656 9 53413570 53414754 Ssu6g3102 6 70575736 70577236 PCT