Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1642 ATGGTAGTGGAGAAAACGAGCCTGACTTCACAACGCTTCGAGCGCGTCTCTTGTCAGTTTCCACAACTTGGGGTGAGAAATGCAGACCATATTTCtgataagaagaaagaaagatggaagGCTCGGTCCAGGACACACAACCCatgttgttttttgtttctcttcctcCTCACGTGCGTGAGGCCAGTTTTGTGTGAAGATGAGAGTTGGGATGGAGTGGTTGTGACAGCATCAAACTTGTTAGCACTTGAAGCGTTCAAGCAAGAGTTGGTTGATCCCGAAGCCTTCTTGCGGAGCTGGAACGACAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGCATCAAGTGTGCTCAGGGACAGGTTATTGTCATACAGCTTCCGTGGAAGGGATTGAGGGGGCGTATCACAGATAAAATAGGCCAACTCCAAGGCCTTAGGAAGCTTAGTCTTCATGATAACCAAATTGGGGGTTCAATCCCTTCAACTTTGGGACTTCTTCCCAACCTCAGAGGGGTTCAGCTCTTCAACAATAGGTTAACAGGCTCCATCCCTCCTTCCTTAGGTTACTGCCCTTTGCTTCAATCTCTTGACCTCAGTAACAACTTGCTCACAGGAACAATCCCTTATAGCCTTGCCAATTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCCTTCTCTGGTTCATTACCGGCTAGCCTAACTCACTCGCTTTCTCTCACATTCCTTTCTCTTCAACATAACAACCTCTCTGGCTCCCTTCCTAACTCATGGGGTGGTAGTCCCAAGAATGACTTCTTTAGGCTTCAAAGTTTGATCCTAGATCATAACTTTTTCGCCGGCAATGTTCCTGCTTCTTTGGGCAGCTTAAGAGAACTCAATGAGATTTCCCTTAGACATAACCGGTTTAGCGGAGCTATACCAAATGAAATAGGAACCCTTCCTAGGCTTAAGACACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACCTTTTCTAATTTATCCTCACTTACACTGCTGAACGCAGAGAACAACCTCCTTAGTAATCAAATCCCTGAAACTTTAGGTAGATTACGCAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTAGTGGACATATTCCTTCAAGTATTGCAAACATTTCCACGCTTAGGCAACTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACAGTCAACGTAGTCTTAATCTCTTCAATGTTTCTTACAATAGCCTCTCAGGTTCTGTTGCCCCTCTACTTGCCAAGAAATTCAACTCAAGCTCTTTTGTGGGAAATATTCAACTATGTGGCTACAGCCCTTCAACTCCATGTCCTTCACCAGCTCCATCAGAAGGAGCCATTGCCCCACCTCCTGAAGTGTCAAAACACCACCACCATAGGAAGCTAAGTACCAAAGACATAATTCTCATAGTAGCAGGAGTTCTCCTCATAGTCCTGATTACACTTTGTTGCATCCTGCTCTTCTGCCTGATCAGAAAGAGAGCAACATCAAGGACCGAGAATGGCCGAGGCACCGGGAGAGCTAGCGCTACAAGGACAGAAAAAGGAGTCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCAATGGCTTTTACAGCTGATGATCTCTTGTGCGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGACGATGGAAGTCAAGTTGCAGTGAAGAGATTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAATTAGACACCCCAATGTTTTGGCTATGAGGGCCTATTACATGGGACCCAAAGGGGAAAAGCTTCTGGTTTTTGACTACATGCCTAAAGGAAGTCTTGCTTCTTTCCTACATGGTGGTGGAACTGAAACATCCATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTTTACCTTCATTCCCAGGAGAACATTATACACGGGAACCTTACATCCAGCAATGTGTTGCTTGATGAGAACACAAATgctaaaattgcagattttggTCTTTCTCGGTTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGGGCACCTGAGCTCTCAAAGCTTAAGAAAGCCAACACTAAAACTGATATCTACAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGACGAAGTCACCTGGGGTGTCTATGAATGGAGTAGATTTACCTCAGTGGGTTGCCTCTATTGTAAAAGAGGAGTGGACAAACGAGGTTTTTGATGCTGACTTGCTGAGAGATGCATCAACAGTTGGCGATGAGTTGCTAAACACACTAAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCGCGACCAGAAGTTCATCAAGTGCTCCAGCAGCTAGAAGAGATTAGACCTGAGAGATCAGTGACAGCCAGCTCTGGGGACGATTTTAACACCTTATAG 2580 0.4407 MVVEKTSLTSQRFERVSCQFPQLGVRNADHISDKKKERWKARSRTHNPCCFLFLFLLTCVRPVLCEDESWDGVVVTASNLLALEAFKQELVDPEAFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTLGLLPNLRGVQLFNNRLTGSIPPSLGYCPLLQSLDLSNNLLTGTIPYSLANSTKLYWLNLSFNSFSGSLPASLTHSLSLTFLSLQHNNLSGSLPNSWGGSPKNDFFRLQSLILDHNFFAGNVPASLGSLRELNEISLRHNRFSGAIPNEIGTLPRLKTLDISNNALNGSLPATFSNLSSLTLLNAENNLLSNQIPETLGRLRNLSVLILSRNQFSGHIPSSIANISTLRQLDLSLNNLSGEIPVSFDSQRSLNLFNVSYNSLSGSVAPLLAKKFNSSSFVGNIQLCGYSPSTPCPSPAPSEGAIAPPPEVSKHHHHRKLSTKDIILIVAGVLLIVLITLCCILLFCLIRKRATSRTENGRGTGRASATRTEKGVPPVAAGDVEAGGEAGGKLVHFDGPMAFTADDLLCATAEIMGKSTYGTVYKAILDDGSQVAVKRLREKITKGQREFESEVSVLGKIRHPNVLAMRAYYMGPKGEKLLVFDYMPKGSLASFLHGGGTETSIDWPTRMKIAQDMARGLFYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVILLELLTTKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLLRDASTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTASSGDDFNTL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1642 859 Pfam Leucine rich repeat N-terminal domain 80 117 IPR013210 -
Ssu9g1642 859 SMART LRR_typ_2 167 191 IPR003591 -
Ssu9g1642 859 SMART LRR_typ_2 316 339 IPR003591 -
Ssu9g1642 859 SMART LRR_typ_2 340 364 IPR003591 -
Ssu9g1642 859 SMART LRR_typ_2 241 262 IPR003591 -
Ssu9g1642 859 SMART LRR_typ_2 143 166 IPR003591 -
Ssu9g1642 859 Gene3D Phosphorylase Kinase; domain 1 577 648 - -
Ssu9g1642 859 Pfam Leucine rich repeat 293 353 IPR001611 GO:0005515
Ssu9g1642 859 PRINTS Leucine-rich repeat signature 194 207 - -
Ssu9g1642 859 PRINTS Leucine-rich repeat signature 316 329 - -
Ssu9g1642 859 Gene3D Ribonuclease Inhibitor 333 459 IPR032675 -
Ssu9g1642 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 852 - -
Ssu9g1642 859 MobiDBLite consensus disorder prediction 519 540 - -
Ssu9g1642 859 CDD STKc_IRAK 577 842 - -
Ssu9g1642 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 852 - -
Ssu9g1642 859 ProSiteProfiles Protein kinase domain profile. 571 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1642 859 SUPERFAMILY Protein kinase-like (PK-like) 575 843 IPR011009 -
Ssu9g1642 859 Pfam Protein tyrosine and serine/threonine kinase 574 839 IPR001245 GO:0004672|GO:0006468
Ssu9g1642 859 SUPERFAMILY L domain-like 116 451 - -
Ssu9g1642 859 Gene3D Ribonuclease Inhibitor 234 332 IPR032675 -
Ssu9g1642 859 Gene3D Transferase(Phosphotransferase) domain 1 649 856 - -
Ssu9g1642 859 Gene3D Ribonuclease Inhibitor 79 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1642 Ssu-Chr9 53234747 53237417 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1642 68 844 Receptor kinase-like Gene Family AT3G51740 63.393 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu9g1642 PK_Tyr_Ser-Thr 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1642 - - gmx:547641 1405.58