Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1636 ATGGATATAAAAGCagCCTTCGAGGCATTTTTGTCTGGGTCATGGCAAGCTGTGGAGCTCATAAAAATTGAGTCAGGAACTATGAGCCTGCATTTTATGGATAATCACCATATGACCATGGAGAAAGGCCTCTTTTCAGACGTTCGAATAAGGTCAAGAAAAGCTACTTTATCAGATTGCTCCTACTTTTTACGACCCGGGATTGACATATGTGTTCTCTCAGCCTCTCAGTGTAGTGATAATTCAGATGAATTTAGTGATGATCATGTGTGGATTGATGCTAAAATAAATTCCATACAGAGAAAACCCCATAACTCAGAGTGCTTGTGTCAGTATTATGTAAACTTCTATGTTAATCAAGGTTCACTTGGTACAGAGATAAGAACTCTTAGTAAGGAGATTAAAGTAGTTGGAATAAATGAAATTGCCATCCTCCAAAAGCTTGAACGTAATAGTTGTGAAAACCAACACTATCGATGGGAATCATCTGAAGACAGCTCCACTGTACTACATACTAAATTGCTCTTAGGAAAATTTTTATCTGACCTTTCATGGTTAGTGGTTACATctgttataaaaaatgtttcattCTGTGCAAGATCTGTGGAGAACAAAATTGTGTATCAAATTTTAGGAAGTGATGCCACTAGCTCTTCATTAAACATAGGTTCTCATATAAGTGTTGTGAACTTCAAAATGGACAAGGAAGGCACGTTAAGGCCCGTTGTTTCTCAAGTTGATGTGTCTGACACCAATAGAAGTGACCATGCACATGATTCCCATTATGATGAAGTGTCACCATCTTATGATGTTGAGGGCTTACGACGATCCAAACGTAGGAACATACAACCTGAACGTTACTTTGGTTGTGGTAATATTTCTGAGATAAAGGTTGGTAACGTTCGAACCTGGCCAtacaagttaaacaaaagaagagatgatgatgatgatgaagagcCATTGCCATTAGCACAAGTGTCCGGGTTGCAAGAGAATTATATAGAAGAGGATGTTGACAATAGTCAAAAGGTCAATGAAGTGAGTTCTTGCCGGGCGATTATAGTGTACCGAAGGAGGAATAAAACCAAGGAAGTAAAGTCAGTTGATGAGGCCAATCAAAATGAACATAAAACTCAACTTGCTAGTGTTCCTCTTCTTGAAGAAGGTGATTCATTAACCCTTGAGCATCGTCCTCTCAATGACAAGGTTACTAGAAGTAAGGCACATTACAGCACCCCTAAGCTTAAGAGGAAGGGATTGTTTGGTCTGGAAGATGATGTAGATTTTGATCCTGGAAGGGAAGGCATAAATTCCAATAAAGGAGTTAGAGAGAAAAGACACCGTTCATGGTATTCAAGAAGTAGAAGTCATGATGCAGAACAAGCTTATAAAGAAAGAAGGTTAAATGCAGCTGACTACAAGGAAATGATAGATTCATACTTAAAGGATATTAATGGAACACCAACTAAAGAAGAGCCACCTATAACGAACCAGTGGAAGGAAGAAAGCAACTTGGGGCAAAAGAAGGAAGCAGAAATACCTCAAAGAGAGGATGATGAACAAATGTCTGAGATGGATATGTTGTGGAGAGAAATGGAAATGGCATTGACATCAAGTTATCTTGAAGAAACAAAGGGTTCAAATGGTGCCAATTTTGCTGAGACTACGGAAGAATCTAATCACACTTGTCAACATGATTACAGATTGTATGAAGAAATTGGAATTTATTGCTACAAATGTGGCTTCGTGAAAACAGagataaaatatgttatgcCACCCTTTATGAAAGTGCAACACCCAGCGAGGCACCAAGAGGAGAAGCAATGCAATGGTGAAGAGTCAAAGCCAAAGGCTGATAAAGATGATGATTTTCATCTGTTCTCAATTCATGCTTCTCGTGATAACATTGCTAAGAAAATTGACTCAAGTATTGGAAAGGAGAGGATGAAGGGTCTAAACATGTTGAGAGAAATCACAAATGGTTTTATAGATGTTCATGAGAGTGGGAATTTTGAGAGTGTTCCTGGTTTGCAAATCTATACGTTGCTAATGAATACAACTGACATGCAGCGTGAAATTTTGCTGCAGTTGCAAACCAAAATGGCTGAGTGCAACGGGTACCCTCTGGAGTTAGAGCTTTTGGTAACCCTTGGATCAATACATCCATGGTTGGTTAAAACAGCCACATGTGCAAATAAGTTTTTCACCTTGGAGCTACTGAAGCAGCTAGAGAAAAGCAAGTTTGATGTGAAAATAGGGtcaaaagttaaatttattttgagccTTGTTTTTCGTGTTATGGAGAAGGAGAAAGTACTTGTCTTCTGCCACAACCTTGCACCTATGAAGTTATTGGTAGAGTTATTTGAGATGTTCTTCAAATgggaaaaagatagagaaattTTGTCACTTAATGGGGAACTAGAGCTCTTTGAACGTGGGAAAGTGATAGATAAGTTTGAGGACCCTGGAGGAGTATCAAAGGTACTCTTTGCTTCAATTACAGCTTGCGCTGAAGGTATTAGTTTGACAGCAGCTTCTAGAGTGGTTTTTTTGGACTCAGAATGGAATCCATCGAAGACAAAGCAGGCTATTGCACGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGGCAACAGGCACATTAGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTTAGTGAGGCTTTTGAGGAGAACCCTTCACATTCGCAAGCAGAGAAGATTGAAGATGATGTACTAAGGGAAATGGTTGAGGAGGACAAGTCTAAATCAATTCATATGATACTAAAGAATGAAAAGGCTTCAACAAACTGA 2859 0.3778 MDIKAAFEAFLSGSWQAVELIKIESGTMSLHFMDNHHMTMEKGLFSDVRIRSRKATLSDCSYFLRPGIDICVLSASQCSDNSDEFSDDHVWIDAKINSIQRKPHNSECLCQYYVNFYVNQGSLGTEIRTLSKEIKVVGINEIAILQKLERNSCENQHYRWESSEDSSTVLHTKLLLGKFLSDLSWLVVTSVIKNVSFCARSVENKIVYQILGSDATSSSLNIGSHISVVNFKMDKEGTLRPVVSQVDVSDTNRSDHAHDSHYDEVSPSYDVEGLRRSKRRNIQPERYFGCGNISEIKVGNVRTWPYKLNKRRDDDDDEEPLPLAQVSGLQENYIEEDVDNSQKVNEVSSCRAIIVYRRRNKTKEVKSVDEANQNEHKTQLASVPLLEEGDSLTLEHRPLNDKVTRSKAHYSTPKLKRKGLFGLEDDVDFDPGREGINSNKGVREKRHRSWYSRSRSHDAEQAYKERRLNAADYKEMIDSYLKDINGTPTKEEPPITNQWKEESNLGQKKEAEIPQREDDEQMSEMDMLWREMEMALTSSYLEETKGSNGANFAETTEESNHTCQHDYRLYEEIGIYCYKCGFVKTEIKYVMPPFMKVQHPARHQEEKQCNGEESKPKADKDDDFHLFSIHASRDNIAKKIDSSIGKERMKGLNMLREITNGFIDVHESGNFESVPGLQIYTLLMNTTDMQREILLQLQTKMAECNGYPLELELLVTLGSIHPWLVKTATCANKFFTLELLKQLEKSKFDVKIGSKVKFILSLVFRVMEKEKVLVFCHNLAPMKLLVELFEMFFKWEKDREILSLNGELELFERGKVIDKFEDPGGVSKVLFASITACAEGISLTAASRVVFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKEWVSSMIFSEAFEENPSHSQAEKIEDDVLREMVEEDKSKSIHMILKNEKASTN 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1636 952 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 758 922 IPR001650 -
Ssu9g1636 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 935 IPR027417 -
Ssu9g1636 952 MobiDBLite consensus disorder prediction 484 521 - -
Ssu9g1636 952 SMART helicmild6 783 872 IPR001650 -
Ssu9g1636 952 MobiDBLite consensus disorder prediction 601 620 - -
Ssu9g1636 952 Pfam Helicase conserved C-terminal domain 755 871 IPR001650 -
Ssu9g1636 952 MobiDBLite consensus disorder prediction 503 521 - -
Ssu9g1636 952 MobiDBLite consensus disorder prediction 432 461 - -
Ssu9g1636 952 Gene3D - 675 952 IPR027417 -
Ssu9g1636 952 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 8 634 IPR044567 GO:0080188
Ssu9g1636 952 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 634 951 IPR044567 GO:0080188
Ssu9g1636 952 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 8 634 - -
Ssu9g1636 952 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 634 951 - -
Ssu9g1636 952 MobiDBLite consensus disorder prediction 248 276 - -
Ssu9g1636 952 MobiDBLite consensus disorder prediction 251 276 - -
Ssu9g1636 952 CDD SF2_C_SNF 746 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1636 Ssu-Chr9 53081144 53086633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1636 801 890 RAD5 or RAD16-like Gene Family AT5G05130 41.935 3.67e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1636 K10875 - gmx:100781856 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1636 9 53081144 53086633 Ssu6g3078 6 70265517 70270984 PCT