Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1631 ATGGATTCCGACTTCCCCAACAAAGCTTTAACGAGCACGCGTTTTTCCGACCTGAAGCCGCCACTCTCGGACCTGGTTCTCCAAGCCCTATCGCAGTCCGGCTTCGAGTTCTGCACACCCGTCCAAGCCGCCACCATTCCTTTGCTGTGCGGCTTCAAGGACGTCGCCGTCGATGCCGCCACCGGTTCAGGCAAAACCCTAGCGTTTCTTGTTCCTCTCGTCGAGATTCTACGCCGCTCCTCTTCCCATCCCAAGCTTCACCAGGTACTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACCCAAATATATCATGTTGCACAACCTTTCATTTCGACATTGGGGAATGTTAAGTCCATGCTTCTCGTTGGTGGGGTAGAAGTAAAAGCAGACATAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATTGGCACGCCTGGGCGGCTATATGACATAATGAATCGGATGGATGTCTTGGATTTGAAAGGCCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATAGCTCTCCTGCCTAAGCTTCGCAGAACTGGTCTGTTTTCTGCTACACAAACTGAGGCTATTGAAGAGCTTTCTAAAGCAGGATTGAGAAATCCTGTGAGGGTTGAGGTTCGAGCAGAAACAAAATCAGAAAATGATCCTGCAGCATCAAAACAACTAGAATCTTCAAAGACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAGTAGATATCCTTATTAAGAATCGctcaagaaaaattataatATATTTCATGACTTGTGCTTGCGTTGATTATTGGGGAGCTATCCTTCCTTGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAGTTCTTCTATGTACCGATGTTGCAGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTACATAGAGTAGGTCGAACTGCTCGGCTGGGTAGACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTTCTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAACATGTTCGGATGATGCATCTGATGTTGTCCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGAGATGTCATGGAAAAGGGAGTCAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCACCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACACCACTCACTTTCCACTGATGGATTTGAACCAGTTGAAGATGTCAATTTGGAGAACATTAAGTACAgGGATAAATCACGGGagaaacaaaggaaaaagaacCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACTGAACAAACCCCCAAATGCTCCCACTGTCATGCGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATGGAAGACGAGGAAGAGTTGATGCAAGAATACCgcttgttgaaaaaattgaaaaaagggaCCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1770 0.4294 MDSDFPNKALTSTRFSDLKPPLSDLVLQALSQSGFEFCTPVQAATIPLLCGFKDVAVDAATGSGKTLAFLVPLVEILRRSSSHPKLHQVLGIIISPTRELSTQIYHVAQPFISTLGNVKSMLLVGGVEVKADIKKIEEEGANILIGTPGRLYDIMNRMDVLDLKGLEILILDEADRLLDMGFQKQITSIIALLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDPAASKQLESSKTPSGLHIEYLECEADKKPSQLVDILIKNRSRKIIIYFMTCACVDYWGAILPCLSVLKGFSLIPLHGKMKQSAREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGRQGHAVVFLLPKEESYVEFLRIRRVPLQERTCSDDASDVVPQIRSAAKKDRDVMEKGVKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTDGFEPVEDVNLENIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKLNKPPNAPTVMRKKTARQRRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1631 589 Gene3D - 3 227 IPR027417 -
Ssu9g1631 589 Gene3D - 254 484 IPR027417 -
Ssu9g1631 589 SMART helicmild6 293 375 IPR001650 -
Ssu9g1631 589 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Ssu9g1631 589 CDD SF2_C_DEAD 254 384 - -
Ssu9g1631 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Ssu9g1631 589 SMART DUF4217_3 413 476 IPR025313 -
Ssu9g1631 589 MobiDBLite consensus disorder prediction 498 557 - -
Ssu9g1631 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Ssu9g1631 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Ssu9g1631 589 CDD DEADc_DDX55 26 224 - -
Ssu9g1631 589 MobiDBLite consensus disorder prediction 498 528 - -
Ssu9g1631 589 PANTHER RNA HELICASE 26 587 - -
Ssu9g1631 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Ssu9g1631 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Ssu9g1631 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Ssu9g1631 589 Coils Coil 539 569 - -
Ssu9g1631 589 Coils Coil 503 523 - -
Ssu9g1631 589 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Ssu9g1631 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 26 587 - -
Ssu9g1631 589 SMART ultradead3 34 254 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1631 Ssu-Chr9 52989159 52993961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1631 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 30.563 2.39e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1631 K14809 - gmx:100801482 1065.83