Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1628 ATGGCCGGGACCGGGAATTCCCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCTAATGATCCTCAAAAGTTCGCTTTAGTTCACAAGGTTTTTGGTGCTAGCAACGTTAGCAAAATGCTACAGGAACTTCCAATTCACCAGAGAGCAGATGCTGTGAGCAGTTTGGTGTATGAGGCACATGCAAGAGTTAGGGACCCGGTGTATGGTTGTGTTGGGGCCATATCCTATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGAAGCCAGTGATGCCAAATCTAGAAATGGAAGACCCAGATCAGAAATCTTACCTTGTCCAGAATGAACTCCCTCAATACCTCAACTATGGCTCTTCTAGCAATGTAATTTATGATTCTCTCTCAAGAGAGAGCGTGTTTGGACATGACATGGTTTCTTCTTGA 507 0.4596 MAGTGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIHQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQKPVMPNLEMEDPDQKSYLVQNELPQYLNYGSSSNVIYDSLSRESVFGHDMVSS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1628 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 5 159 - -
Ssu9g1628 168 Coils Coil 87 107 - -
Ssu9g1628 168 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Ssu9g1628 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 159 - -
Ssu9g1628 168 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1628 Ssu-Chr9 52963192 52963930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1628 1 134 AS2 family AT2G30130 78.261 1.79e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu9g1628 LOB 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1628 - - gmx:121173085 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1628 9 52963192 52963930 Ssu6g3074 6 70197111 70197956 PCT