Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1621 ATGAGCAAAAACTGGAAATTCAGCTGCTTCAGGGATCGTGGGGGAGTTCTGTTCCTTCTAACGTTGTGTTTGTTGTTTCAGAACTTTTGTTTGTGCTGCTCTTTGAATGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGCAGGGAATAGTAAGAGACCCTTTTGGTGCTTTGTCGAATTGGATTAACGATGAAGTAGCAGTTAACCCCTGTAATTGGTTTGGAGTTGAGTGCTCTGATGGAAGAGTGGTGGTCTTGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCAGATAAAGTCCATAATTTTGCGGAACAATTCATTTTATGGAATCATCCCTGAAGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCGCTACCTACAGATCTTGGGAATAATATTTCACTGACAATCCTTTTGCTGGATAACAATGATCATCTTTGTGGTTTCTCTCctgaaattattgaattgaagATGCTTTCTGAATATCAAGTAGATGAAAACCAATTAATTAGTGCAGAAAAAGTGCCAGCTTGTACAAGAAGATCCATCAAACGGCATGTtggccaaaataaaaaaggtcttCGGAGGCTACTGCAAACTCGTTTTCGTCAAGGTGAAAGTCCTTATAATCGTGCGGCTGATTTTCCTGATAGTCCTGCTCCATCTCCTTCAGCTCCCCCACCTGCCTCAGCAACGCCACCACTGGCTGCTTCTCCTTCAACTCCTTCACCTTCAAATTCTGCTGACCGAAATGCTTCTGCTTCTCCTTCAACTCCTTCCCCTTCAGATTCCGCTGGCCGAAATGTTTCTGCTTCTCCTTCTCCCCTGCCAGGCTCTGCACCACAACCTAAAAGTAACTCATCAAAGAACCATCTAGTTGTTATTTTGGCTGGAGTTATGGGTGGTGCTGTATTTCTTCTCATTTCAATCATTGGCATATATCTCTGTAAAACAAACAAGGTAGCTACTGTAAAACCTTGGGCCACAGGATTAAGTGGACAGCTTCAGAAGGCATTCGTAACAGGTGTGCCGAAGCTAAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGCACTTCATCCATTGGTACAGTGTACAAAGGAACTTTATCTAGTGGTGTAGAAATAGCTGTGGCCTCTGTTGCAGTGACATCATCCAAAGATTGGTCAAAGACTTCAGAAGCCCAATTTAGGAACAAGATAGATACATTATCAAAGGTGAACCACAAGAATTTTGTAAATCTTCTTGGATATTGTGAAGAAGAAGAGCCTTTCACCAGAATGGTGGTTTTTGAATATGCCCCTAATGGAACACTCTTTGAACATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGGAGCAAGACTTAGAGTTGCCATGGGCATGGCTTACTGCCTACAACATATGCACCAGTTGGACCCTCCTTTGGTCCTTAGCAACCTGAATTCTTCAGCTGTCCTACTCACTGATGATTATGCTGCCAAAATCTCAGATTTGAGTTTCTTGAATGAAATAGCTTCAGCTGTGATAAAATCTTCTGCTAAAAAACACACTGACACGACACCAGCAAGTAACATTTACAGCTTTggtgttatattatttgaaatggtAACAGGCAGGCTCCCTTATTCAGTGGACAATGATGGCTCACTTGATGACTGGGCTTCACACTATTTACAAGGGGATCAGCCCTTCAAAGAAATGGTGGATCCAACTCTAGCATCCTTCCAAGAAGAACAGCTGGAACAAATTGCTGCTTTGATTAAATCTTGTGTCCATCCTGATCAAGAGAAGAGACCAACAATGAAAGAAGTTTGTGCGAGATTAAGAGAGACAACAAAAATAACACCCGAAGCAGCTGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTGTAGATGCAAGCTGA 1998 0.4089 MSKNWKFSCFRDRGGVLFLLTLCLLFQNFCLCCSLNEEGKALLKLKQGIVRDPFGALSNWINDEVAVNPCNWFGVECSDGRVVVLNLKDLCLEGNLVPELANLVQIKSIILRNNSFYGIIPEGIAHLNELEVLDLGYNNFSGPLPTDLGNNISLTILLLDNNDHLCGFSPEIIELKMLSEYQVDENQLISAEKVPACTRRSIKRHVGQNKKGLRRLLQTRFRQGESPYNRAADFPDSPAPSPSAPPPASATPPLAASPSTPSPSNSADRNASASPSTPSPSDSAGRNVSASPSPLPGSAPQPKSNSSKNHLVVILAGVMGGAVFLLISIIGIYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASVAVTSSKDWSKTSEAQFRNKIDTLSKVNHKNFVNLLGYCEEEEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWGARLRVAMGMAYCLQHMHQLDPPLVLSNLNSSAVLLTDDYAAKISDLSFLNEIASAVIKSSAKKHTDTTPASNIYSFGVILFEMVTGRLPYSVDNDGSLDDWASHYLQGDQPFKEMVDPTLASFQEEQLEQIAALIKSCVHPDQEKRPTMKEVCARLRETTKITPEAAVPKLSPLWWAELEISSVDAS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1621 665 SUPERFAMILY L domain-like 38 191 - -
Ssu9g1621 665 MobiDBLite consensus disorder prediction 221 306 - -
Ssu9g1621 665 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Ssu9g1621 665 SUPERFAMILY Protein kinase-like (PK-like) 358 634 IPR011009 -
Ssu9g1621 665 MobiDBLite consensus disorder prediction 238 259 - -
Ssu9g1621 665 Pfam Protein tyrosine and serine/threonine kinase 377 634 IPR001245 GO:0004672|GO:0006468
Ssu9g1621 665 Gene3D Transferase(Phosphotransferase) domain 1 458 646 - -
Ssu9g1621 665 PANTHER PROTEIN MALE DISCOVERER 2 1 665 - -
Ssu9g1621 665 MobiDBLite consensus disorder prediction 260 306 - -
Ssu9g1621 665 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Ssu9g1621 665 ProSiteProfiles Protein kinase domain profile. 375 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1621 665 PANTHER BNAA09G55080D PROTEIN 1 665 - -
Ssu9g1621 665 Gene3D Phosphorylase Kinase; domain 1 347 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1621 Ssu-Chr9 52844751 52848789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1621 17 630 Receptor kinase-like Gene Family AT1G66830 26.012 1.40e-45 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu9g1621 PK_Tyr_Ser-Thr 2.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1621 - - gmx:100784541 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1621 9 52844751 52848789 Ssu6g3064 6 70074803 70078740 PCT