Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1616 ATGGTGCGTGTCAAAGAAGCTTTGGTAATAACCCCTTCCGAGCCCACACCGAATAATGTCCTCGCGCTCTCCGCACTTGACTCGCAACTCTTCCTCCGTTTCACCATAGAGTACCTTCTTATTTACAGTCCCGGGCCGGGCCTGGACCGAGTTTCCACCACGGCTCGTTTAAAAGCTGCATTAGCGAAAGCGCTTGTTCCTTATTACCCATTCGCCGGAAGGGTCCGGGCCCGGCCCGACGGGTCGGGCCTCGAGGTCGTGTGCCGGGCCCAGGGCGCGGTCTTCATCGAAGCCTCCTCCGAACGTTACACCCTCCACGATTTCCAAAAGGCCCCCAAAACAGTGGCCCAATGGAGGAAGCTCTTGTCCCTCTACGTCACCGACGTTCTCAAAGGCTCCCCGATTCTCGTCCTCCAGCTGACGTGGCTCGCCGACGGCGCCGCCGCCGTCGGCGTCGGAATCAACCACTGCATCTGCGACGGCATCGGCAGCGCCGAGTTTCTGAATTATCTCTCCGATTTAGCTTCTCGAATCGGCGCGGATCCGAAACCCAAACCCGTTTGGGATCGCCACCTTCTCAATCCCAACCCGAATAGCGCGGCTCGGGCCAACCCGGGGCTCCACCCCGAGTTCACTCGGGTTCCGGATCTGTGCGGGTTCATGAACCGGGTCACGAGCGGGCTTAAACCGACTTGCGTTGTGTTCGACGAGAGAAAGATCAACGCACTGAAGAACGCGTGTGAAGCGGGCGAGCCGTCGTCGTACACGTCGTTCGAGGTTCTGGCTGCGCACGTGTGGAGGAGTTGGGCGAGGGCGTTGGGGTTTCCGAAGAACCAGACGGTGAAGCTTTTGTTCAGCGTGAACGTGCGGAGGCGCGTGAAGCCGGGTCTTCCGGAGGGGTATTATGGGAACGCGTTTGTGTTAGGGTGCGCGCAGAGCAGCGCGTGGGAGCTGGGGGAGAGAGGGGTGGGGCACGGGTCGGGTCTGGTGAAGCGTGCGAAGGAGAGGGTGGACAGCGAGCACGTGCGGAGGGTAGTTGAATTGGTGTCCGAGTCGAGGGCGAGTCCTGACTCGGTGGGGGTGCTCATACTGTCGCAGTGGTCCAGGCTGGGTCTGGAGAGGGTTGAACTGGGAATGGGAATGGGGATGCCTCTGCATGTGGGGCCCATATGCTGCGATAGGTACTGTTTGTTCCTTCCGGTGGCCGGTGAACGGGCCAGTGTCAAGGTCATGGTGGCTGTCCCCACTGCCGCCGTTGACAATTTTCACCGTTTCCTCCGGGAATCGAATTTATGA 1296 0.6011 MVRVKEALVITPSEPTPNNVLALSALDSQLFLRFTIEYLLIYSPGPGLDRVSTTARLKAALAKALVPYYPFAGRVRARPDGSGLEVVCRAQGAVFIEASSERYTLHDFQKAPKTVAQWRKLLSLYVTDVLKGSPILVLQLTWLADGAAAVGVGINHCICDGIGSAEFLNYLSDLASRIGADPKPKPVWDRHLLNPNPNSAARANPGLHPEFTRVPDLCGFMNRVTSGLKPTCVVFDERKINALKNACEAGEPSSYTSFEVLAAHVWRSWARALGFPKNQTVKLLFSVNVRRRVKPGLPEGYYGNAFVLGCAQSSAWELGERGVGHGSGLVKRAKERVDSEHVRRVVELVSESRASPDSVGVLILSQWSRLGLERVELGMGMGMPLHVGPICCDRYCLFLPVAGERASVKVMVAVPTAAVDNFHRFLRESNL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1616 431 Gene3D - 223 428 IPR023213 -
Ssu9g1616 431 Gene3D - 1 211 IPR023213 -
Ssu9g1616 431 Pfam Transferase family 1 423 - -
Ssu9g1616 431 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 425 - -
Ssu9g1616 431 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 3 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1616 Ssu-Chr9 52795775 52797070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1616 2 428 Monolignol Biosynthesis Gene Families AT5G48930 28.859 1.32e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1616 - - gmx:100803812 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1616 9 52795775 52797070 Ssu6g3059 6 69993472 69994791 PCT