Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1615 ATGGAAGTGAGAGCCATGAAGGGTTATGAGCCCCGTTCAAGCTCCTCATGTGCAGCTTGCAAGTTATTGAAAAGAAGATGCATACCCAATTGTATTTTCGCACCTTACTTTAGGTCTGATGAGTGTAAGAAGTTTGCCAAGGTGCACAAGGTATTTGGAGCCAGCAATGTGAGCAAGATCCTGATTGAAGTGCCAGAGGAGCAGAGAGAGGACACAGTGAATTCTCTGGCTTATGAGGCTGAGGCAAGGCTGAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGATCTGGCCATTGCTAAGGATCGTCTTGCACGTTGTCATGCTGCTGCTTCTGCTGCTGCTACCATCCCTTCTCCTGAAATCTTGCATGCCCATGTTAGCTTGCCCCCATTCCCTGACTTTTGCTCTTCCAGTGATTTCAATGATATCTTCTGCCACAGTTCTTCATCTCAATTATTGAGCCGACATGAAACGGTGGATGATTTCAatcaaatcccatatatattttaa 549 0.4499 MEVRAMKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAASAAATIPSPEILHAHVSLPPFPDFCSSSDFNDIFCHSSSSQLLSRHETVDDFNQIPYIF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1615 182 Coils Coil 95 115 - -
Ssu9g1615 182 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Ssu9g1615 182 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Ssu9g1615 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 177 - -
Ssu9g1615 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 6 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1615 Ssu-Chr9 52771180 52771728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1615 6 147 AS2 family AT3G11090 68.966 6.38e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu9g1615 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1615 - - gmx:100305534 340.502