Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1614 ATGATACTGTTTGTTCTGATGCCCCACCGTCGTAGCCCTCCTCCGCCGTTCGCCACCGCCCGCCACCGCCGTCACAATCAGATCACGATGTCGAACCCAGATTCCCGGCCATTGAGTTGGCACTACACGGAGATCGATGACAGAGACCTCGAGATCCGAGGCAGGACGCTGTTCTTCGTCATCGTAATCTTCGCCATTATCCTTTTCGTCACCGTTCTCTTCGTCTACACTCGCTGGGTTTGCCGCTACCACGGGCGCCTCCCCACCACCGCGTTCTCCGCCGCTGTCCACGCGCCGCCGCTCGCTCCGCCGCAGGGACTGGACCCCGCTTCCATCAAGAAGCTGCCTATCATCCTCCACCACGCGCCGTCGGATCGCGAGGAAAGCGCGTGGGACGAAACGGAGTGCTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCAGGGTGTGACCACTATTTCCATTGCGACTGTGTTGATAAGTGGCTCACTCATCACTCTAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCAAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACTTCCAATTCTAA 612 0.5686 MILFVLMPHRRSPPPPFATARHRRHNQITMSNPDSRPLSWHYTEIDDRDLEIRGRTLFFVIVIFAIILFVTVLFVYTRWVCRYHGRLPTTAFSAAVHAPPLAPPQGLDPASIKKLPIILHHAPSDREESAWDETECCICLGEFRDGEKVKVLPGCDHYFHCDCVDKWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1614 203 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 193 IPR044675 -
Ssu9g1614 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 184 IPR013083 -
Ssu9g1614 203 PANTHER RING-H2 FINGER PROTEIN ATL66 31 193 - -
Ssu9g1614 203 SMART ring_2 136 177 IPR001841 -
Ssu9g1614 203 SUPERFAMILY RING/U-box 126 184 - -
Ssu9g1614 203 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Ssu9g1614 203 Pfam Ring finger domain 135 178 IPR001841 -
Ssu9g1614 203 CDD RING-H2_PA-TM-RING 135 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1614 Ssu-Chr9 52722944 52723555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1614 28 186 C3H Transcription Factor Family AT3G11110 41.818 4.00e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1614 - - gmx:100803278 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1614 9 52722944 52723555 Ssu6g3057 6 69949938 69950480 PCT