Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1612 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACCATGGAAAATTACTATGATTCTGGCTGGCATATGGGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTTGCAGTACCTACACAAATACTACCTCATGTTTCTGACTCTGCCTCTCTTCAATTCGGTGAGTTCCATTCTTGGCCACTACCCATTGAAGGGGCTGCAGAAGAGAGAGCAATAAGTGCTTCCAAGAGTCACAGTCAAGCAGAGAAACGGCGCAGAGACAGGATCAATACACAGCTTGCAACTCTCAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTCAAAGATCTAAAGCGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACCGAAATTGATGAAGTATCAATTGACTGTGACCATGTTCAAGATGAAAGCTGCACGAAAGTGAACAAATTGAAGGACAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCGGTTAAAGCTGACATAGCCAGTGTGGGTGGCAGGATTAAAAGCATATTGGTGCTTTGTTCTAAGGACAGTGAAGAGGGTGTTTGCCTTGCCACTCTCAAACAGTCCCTAAAATCTGCTGTGACCAAAATTGCTTCATCATCCATGGCATCTAATTGTCCCACTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCATTGTCtacagtaa 819 0.4359 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSWAQCSDHSSSFAVPTQILPHVSDSASLQFGEFHSWPLPIEGAAEERAISASKSHSQAEKRRRDRINTQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVQDESCTKVNKLKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGVCLATLKQSLKSAVTKIASSSMASNCPTRSKRQRFFLPSHCLQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1612 272 PANTHER TRANSCRIPTION FACTOR BHLH51 47 270 - -
Ssu9g1612 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Ssu9g1612 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Ssu9g1612 272 Gene3D - 77 141 IPR036638 GO:0046983
Ssu9g1612 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Ssu9g1612 272 SMART finulus 89 138 IPR011598 GO:0046983
Ssu9g1612 272 PANTHER TRANSCRIPTION FACTOR BHLH30 47 270 IPR045847 GO:0003700|GO:0006355
Ssu9g1612 272 CDD bHLH_AtAIG1_like 78 155 - -
Ssu9g1612 272 CDD ACT_UUR-ACR-like 179 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1612 Ssu-Chr9 52707652 52708854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1612 21 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.424 4.50e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g1612 HLH 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1612 - - gmx:100799687 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1612 9 52707652 52708854 Ssu6g3054 6 69919841 69921349 PCT