Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1595 ATGACATCGTCGTGGAGTCACCACTCGCACCCGCCCCCGCCACTCTCCGACTCCGACTCCGACTCCGACGAGTGTTCCTCCGCCGCGACGCCCCTCCGCCACTCCGACCTCTCCGCCTCCATCCTCAAACCGTACCTGGATCTCTCCGGCCACTCCGGCGCCGACCTCTCGAAGATCCAATCCTTCCTGACGTCCTCCTCCTCCGGCGCCCTGTCCTGCCTCATCTGCCTGGAGCGCATCAAGCCCTCCGACCCCACCTGGTCCTGCTCCTCCCTCTGCTTCGCCGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGCCAGGCCTCCGACCTCGCCGCCGCACGCGCCGCCACGCGCCTCCCCATCTCCGCGGACATCGCTTCCCACACCGCCCTCTGGAACTGCCCCAAATGCAGAACCGAATACAGCAAATCCCGCATTCCCAAAACCTACCTCTGCTTCTGCGGGAAGCTCGAGAACCCTCCCAGCGATCCGTGGGTTCTGCCGCACTCTTGCGGCGAGGTTTGTGGAAGGCCCTTGAAGCACAACTGCGGCCACCGCTGTCTGTTGCTCTGCCACCCCGGACCGTGCCCCTCCTGCCCCAAACTCGTTGACGCTCGATGCTTTTGTGGGTCCCAAGAAGATGTTCGGCGATGCGGGTTCAAGGAGTTTTCTTGCAACAGTCCCTGTTCCAAGGTTTTGGACTGTGGGGTTCACCGCTGCGTGGAGGTTTGCCACCGTGGCGCTTGCCCTCCTTGCCGGACACGTGCCGTGCACGCGTGCCAGTGTGGGAGGGTGAAGGAGGAGAGGGAGTGCTGTGATCGTGTTTTCCAGTGTGGGTATCCGTGCGAGAAGAGGCTTGGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGACTGTGGTGAGTGTCCCCTTAAGGGGAGGAGAACGTGTCCTTGTGGGAAGAGGGTTTATGAGGGAATGCCTTGTGATGCTCCTGTGCAGCTTTGTGGGGCTACTTGTGATAAGATGTTGCCCTGTGGCTACCACAGGTGCCCCGAGCGGTGCCACCGTGGACGGTGCGTGGAGACTTGTAGGGTTGTCGTGAAGAAGTCGTGTCGATGTGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGTGAAAGGAAGTGTCAGAGGATGCGTGACTGCGGCCGGCATGCTTGCAAGCGGCGCTGCTGCGATGGGGATTGCCCTCCCTGCTCGGAGaTATGTGGCAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGTATGTGGAGAGACACGGTTTGAGGTTCCTTGTGGTGCCGAAATGGACCAAAAGCCACCTAGATGTCCTAAACCATGTCCTATCACTCCTTTATGTCGGCATGCATCAAATTGCAAGcCACATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTGCCTTGTGCCGAAGAATACCAATGTGGCCATACATGCAAATTAAGGTGTCATGGTGCTAAGCCTCCTCCTAATCCAGAGTTTACTCTcaaaccaaagaaaaagaagattatACAACAAAGCGAAAGTGTTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTATTGTGGAGATCATGTGTTGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGATAATTTATGTGGTAATCCTCTACCATGTGGTAATCATTATTGTACAAAAACCTGCCATGCCTTGGAAAACCAGTCTTCCATAAACCAGTTACAAGGAAGTGAGCCTTGTGAAGATTGTAATCTTCCTTGCCAAAAGGAAAGAGAGCCTACATGTCCACACCACTGCCCTCAGCCATGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGTACAATGGTCCATGTTTTTGAGTGCATATATTACAACAGCTTGTCTGCTAAGGATCAAGAGACTGTCCGCTCATGTGGTGGGCCATGTCACAGAAAGTTGCCAAATTGTACACATCTATGCCCAGAGACATGTCATCCAGGTCAATGCCCAAATGCTGAGAAATGTTGTAAAAAGGTCACTGTTCGATGCAACTGCCAAACATTGAAAAAGGAGTGGCTCTGTCAAGATGTTCAAGCAGCATATCGTCTTGCGGGTTGCCATCCAAGGGATGtactaaaaaatcaatttggaaTTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGTAAATCTAGAGTTACAGAGGTACAAGAAGCAGACATAGAAAAATCAGTTCGAAAGCGACGAAAAAGGCGGGAACGGGTTCTAGAATCCAAGGAAACAACAAAACTACAGGTAATGTTAGTTTTcgtaataaaagaattatatctAAGTTCCGATTGCCTTTTTCTTCGCTGA 2517 0.5177 MTSSWSHHSHPPPPLSDSDSDSDECSSAATPLRHSDLSASILKPYLDLSGHSGADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISADIASHTALWNCPKCRTEYSKSRIPKTYLCFCGKLENPPSDPWVLPHSCGEVCGRPLKHNCGHRCLLLCHPGPCPSCPKLVDARCFCGSQEDVRRCGFKEFSCNSPCSKVLDCGVHRCVEVCHRGACPPCRTRAVHACQCGRVKEERECCDRVFQCGYPCEKRLGCGKHVCERGCHSGDCGECPLKGRRTCPCGKRVYEGMPCDAPVQLCGATCDKMLPCGYHRCPERCHRGRCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCVCGETRFEVPCGAEMDQKPPRCPKPCPITPLCRHASNCKPHKCHYGACHPCRLPCAEEYQCGHTCKLRCHGAKPPPNPEFTLKPKKKKIIQQSESVPGTPCPPCPELLWRSCVGQHIGAERMMVCSNKSQFSCDNLCGNPLPCGNHYCTKTCHALENQSSINQLQGSEPCEDCNLPCQKEREPTCPHHCPQPCHPGDCPPCKVLIKRSCHCGTMVHVFECIYYNSLSAKDQETVRSCGGPCHRKLPNCTHLCPETCHPGQCPNAEKCCKKVTVRCNCQTLKKEWLCQDVQAAYRLAGCHPRDVLKNQFGIGLIPCNSDCKSKVQVVESELQLRKSRVTEVQEADIEKSVRKRRKRRERVLESKETTKLQVMLVFVIKELYLSSDCLFLR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1595 838 CDD NF-X1-zinc-finger 414 462 - -
Ssu9g1595 838 Pfam NF-X1 type zinc finger 510 519 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 185 202 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 344 363 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 237 255 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 397 415 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 418 442 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 290 308 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 636 651 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 Pfam NF-X1 type zinc finger 592 602 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 16 819 IPR034078 GO:0003700
Ssu9g1595 838 CDD NF-X1-zinc-finger 173 221 - -
Ssu9g1595 838 MobiDBLite consensus disorder prediction 1 31 - -
Ssu9g1595 838 CDD NF-X1-zinc-finger 227 275 - -
Ssu9g1595 838 CDD NF-X1-zinc-finger 334 383 - -
Ssu9g1595 838 SUPERFAMILY RING/U-box 67 146 - -
Ssu9g1595 838 CDD NF-X1-zinc-finger 280 327 - -
Ssu9g1595 838 SMART znfxneu3 344 364 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 510 555 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 424 443 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 185 203 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 487 502 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 397 416 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 634 652 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 237 256 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 592 624 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 290 309 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 SMART znfxneu3 697 719 IPR000967 GO:0005634|GO:0008270
Ssu9g1595 838 CDD NF-X1-zinc-finger 387 435 - -
Ssu9g1595 838 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 16 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1595 Ssu-Chr9 52276598 52283587 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Ssu9g1595 zf-NF-X1 0.0023 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1595 K15683 - gmx:100799540 1579.3