Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1582 ATGACCGCCGCCGCCGCGTCATACTTCTTCGGCAGCCGCCTCAACAGCCCGACAACGTTAAACACGGGAAGATTCCACGCGCTCGTCAACTTCGGCACCAAGAAGGCGCCGCCGAAGAAAAAGGCAGTGAAAGCGAAACCCGCCGGCGACCGGCTGGTGTGGTTCCCGAAGGCGGAGCCGCCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGACCCGTTCGGGTTCGCGAGACCCGCGGAGTACCTGCAGTTCGAACTGGACTCGCTGGACCAGAACCTCGCCAAGAACGTCGCCGGCGACATCATCGGAACCAGGGTGGAGGTCGCGGAGGTCAAACCGACGCCGTTTCAGCCCTACACGGAGGTGTTCGGCTTGCAGAGGTTCCGCGAGTGCGAACTCATTCACGGAAGGTGGGCAATGCTGGGTGCGCTCGGTGCTTTGGCCGTTGAGGCTCTCACTGGGGTCGCTTGGCAAGACGCCGGAAAGGTAGAACTTGTGGAAGGGTCATCTTACCTGGGACTCCCTCTTCCATTTTCATTGACCACACTGATCTGGATTGAGGTGATATTGATAGGGTACATAGAGTTTCAAAGAAATGCAGAACTGGACCCAGAGAAAAGGTTGTACCCAGGGGGCAGGTTCTTTGATCCTTTGGGTTTGGCCAACGACCCTGAAGAAAAGGCTAGGCTTCAACTTGCAGAGATCAAGCATGCCCGCTTAGCTATGGTGGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTAACAGGAAAAGGCCCTATCAGTTTTATTGCTACCTTCAACAAGTGA 819 0.5665 MTAAAASYFFGSRLNSPTTLNTGRFHALVNFGTKKAPPKKKAVKAKPAGDRLVWFPKAEPPEWLDGSMIGDRGFDPFGFARPAEYLQFELDSLDQNLAKNVAGDIIGTRVEVAEVKPTPFQPYTEVFGLQRFRECELIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVILIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHARLAMVVFLIFAIQAAVTGKGPISFIATFNK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1582 272 Gene3D Chlorophyll a/b binding protein domain 52 272 - -
Ssu9g1582 272 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 272 IPR001344 GO:0009765|GO:0016020
Ssu9g1582 272 SUPERFAMILY Chlorophyll a-b binding protein 47 269 - -
Ssu9g1582 272 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.3, CHLOROPLASTIC 2 272 - -
Ssu9g1582 272 Pfam Chlorophyll A-B binding protein 60 256 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1582 Ssu-Chr9 52095958 52098455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1582 10 269 Chloroplast and Mitochondria Gene Families AT3G08940 71.538 5.25e-136 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1582 K08915 - gmx:100820335 485.723