Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1576 ATGGCGGTGAAACGCACGAAAGCGCAGAAGAAGGTGGCGTACGATGCGAAGCTGTGCCAGCTTCTGGAGGATTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTCGGATCCAACCAGCTTCAGAACATTCGAAGGGGTCTACGTGGCGACTCTGTGGTGCTCATGGGAAAGAACACGATGATGAAGCGCTCTATTAGGATCCACTCCGAGAACACCGGCAACAACGCCTTCCTCAACCTCATTCCCCTTCTTGTGGGTAATGTGGGGTTGATTTTCACGAAAGGTGACTTGAAGGAGGTTAGCGAAGAGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGTTTGGTTGCACCTATTGATGTTGTTGTTCCTCCGGGCAACACAGGGCTCGATCCTTCTCAGACTTCTTTTTTCCAGGTGCTTAACATTCCTACCAAGATTAATAAGGGTACTGTGGAAATCATCACCCCTGTAGAACTCATTAAAAAGGGAGACAGGGTTGGCTCTTCTGAAGCTGCATTGCTTTCCAAGCTTGGGATAAGGCCCTTCTCTTATGGGCTTGTTGTCCTTTTTGTTTATGACAGTGGTTCAGTTTTTAGCCCTGCGGTTCTTGATCTGACCGATGACGACCTCGTTGAGAAGTTTGCCGTTGGTGCCTCCATGGTGACTTCACTTTCGTTGGCTATCTCATACCCAACAGTGGCAGCTGCACCACACATGTTTGTCAATGCCTATAAGAACGTCCTGGCTGTTGCAGTGGCAACAGAATATTCTTTCCCCCAGGCAGACAAGGTTAAGGAGTACTTGGAGGATCCTAGTAAATTTGCTGTAGCTGCTGTTGCCGCACCTGCTACTGATTCTGGCACTGCTCCAGCTACTGCCTCCAAGGAGGAGGAAAAGAAGGAAGAACCGGCTGAAGAATCTGATGATGACATGGGTTTCagtttgtttgattaa 966 0.4896 MAVKRTKAQKKVAYDAKLCQLLEDYTQILVVAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRSIRIHSENTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSEAALLSKLGIRPFSYGLVVLFVYDSGSVFSPAVLDLTDDDLVEKFAVGASMVTSLSLAISYPTVAAAPHMFVNAYKNVLAVAVATEYSFPQADKVKEYLEDPSKFAVAAVAAPATDSGTAPATASKEEEKKEEPAEESDDDMGFSLFD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1576 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 321 - -
Ssu9g1576 321 PIRSF L10E 1 321 IPR030670 GO:0042254
Ssu9g1576 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Ssu9g1576 321 Pfam Ribosomal protein L10 8 108 IPR001790 -
Ssu9g1576 321 CDD Ribosomal_P0_L10e 9 185 - -
Ssu9g1576 321 Pfam 60s Acidic ribosomal protein 234 320 - -
Ssu9g1576 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 321 - -
Ssu9g1576 321 MobiDBLite consensus disorder prediction 285 321 - -
Ssu9g1576 321 Gene3D - 6 209 IPR043141 -
Ssu9g1576 321 Gene3D - 114 185 IPR043164 -
Ssu9g1576 321 SUPERFAMILY Ribosomal protein L10-like 7 134 IPR043141 -
Ssu9g1576 321 MobiDBLite consensus disorder prediction 306 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1576 Ssu-Chr9 52006006 52008115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1576 1 320 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 81.250 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1576 K02941 - jre:108980032 548.51