Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1573 ATGGCGTCGAGCGATCGCACAGTGTTGCagttctcttcttcttcttcttcttcgccAAGCTTGTCCGCGAAGGTCCACCCTCTGGTTATCTTCAACATCTGCGATTGCTACGTTCGACGCCCTGACCAAGCCGACCGCGTCATCGGAACCCTACTTGGCTCCATCCTCCCCGACGGAACCGTCGATATCCGCAATTCCTATGCCGTTCCTCACAACGAGTCTATCGAGCAGGTTGCTTTGGATATAGAGTACCACCACAACATGTTAATATCCCACCAAAAAGTCAATCCAAAGGAAATCATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGCAGTGCATTGATCCATGAATTTTACTCTCGAGAAGTACCCAATCCCATACACTTGACTGTTGATACAGGATTTACAATTGGAGCGGGTACCATTAAAGCATATGTGTCTAACAATTTATCTGTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTGGAAGCTGAGCGAGTTGGATTTGATATGCTGAAGGCAACAGCTGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTACTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCACCAGACAACAAAATCGGGAGATTCATATCAGATGCTGTAGGTTCCCTTCCCAAAGTGACCCCATCAGTTTTTGATAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTTTTGCTATATTTATCTAGCATCACAAGAACGCAGCTTAGCTTGGCAGAAAAATTGAACACAGCTGCTCAGATTCTGTGA 867 0.4348 MASSDRTVLQFSSSSSSSPSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSILPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTIGAGTIKAYVSNNLSVGERQIAAQFQEIPLDLRMVEAERVGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVTPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1573 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Ssu9g1573 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 22 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu9g1573 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu9g1573 288 MobiDBLite consensus disorder prediction 1 21 - -
Ssu9g1573 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Ssu9g1573 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 8 287 - -
Ssu9g1573 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu9g1573 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu9g1573 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 8 287 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu9g1573 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1573 Ssu-Chr9 51958443 51962331 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1573 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 76.289 2.46e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1573 K03249 - gmx:100790913 508.834