Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1572 ATGGGTGTCAACAGAGCTGACACCAAGTGCGCTTCCGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTTGCTCTAGTCTATTGCACCGCTGGCATCTCTGGGGGACACATAAACCCGGCTGTGACATTTGGGCTGTTCTTGGCGAGGAAATTGTCGTTGACTAGGGCGCTGTTCTACATGGTGATGCAGGTTTCGAGGGAAAAACCTTTCTATGGGAAACACAACGGTGGTGCCAACTTTGTTGCCCCTGGTTACACCAAAGGTGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCATTCTTGTCTACACCGTTTTCTCAGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCcctCTTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCAATCACTGGAACGGGTATCAACCCTGCTCGAAGTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACTGGATTTTCTGGGCTGGACCTTTCATCGGAGCAGCTCTTGCGGCTCTTTACCACCAAGTCGTAATCAGAGCCATTCCCTTCAAATCCAATTAA 609 0.514 MGVNRADTKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVSREKPFYGKHNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWAGPFIGAALAALYHQVVIRAIPFKSN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1572 202 Pfam Major intrinsic protein 8 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g1572 202 PANTHER AQUAPORIN PIP1-2-RELATED 1 201 - -
Ssu9g1572 202 SUPERFAMILY Aquaporin-like 6 195 IPR023271 -
Ssu9g1572 202 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 201 IPR034294 -
Ssu9g1572 202 CDD MIP 11 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g1572 202 Gene3D Glycerol uptake facilitator protein. 72 201 IPR023271 -
Ssu9g1572 202 Gene3D Glycerol uptake facilitator protein. 1 69 IPR023271 -
Ssu9g1572 202 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Ssu9g1572 202 PRINTS Major intrinsic protein family signature 97 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g1572 202 PRINTS Major intrinsic protein family signature 173 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g1572 202 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g1572 202 PRINTS Major intrinsic protein family signature 133 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1572 Ssu-Chr9 51953865 51954853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1572 1 202 Major Intrinsic Protein MIP AT4G23400 83.099 1.67e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1572 K09872 - gmx:100791447 381.719