Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1569 ATGCCTTCTTCTGCACTCACCGTCCACTCAAAATGCACCGTTGTGCCTCACCAGAACTCCACTCTGGGGGACCTCAAACTCTCTATCTCTGACCTCAACATGCTCCTCTCTCACTACATCCAAAAGGGGTGCCTCTTCCCCACCCCTTCTCTCCCCTCTCGCACTCTCATCCCTCACCTCACCAACGCCCTTTCTCGCACCCTCTCTCTCTTCCCTCCCTTCGCCGGCCGCCTCAAAACCGACGCCGACGGTTACGTCTACATCGCATGCAACGACGCCGGTGTCGAGTTCGTCCACGCCTCAGCCGCCGCCGCCGGCGACATCTCTGTCTCCGACCTCCTGTCCCCGCCGGACGTCCCTCCAGCATTCAAACAGCTCTTCCCCTTCCACCACAAAATCAGTCACACCGCTCACTCCTCCCCTATCATGGCCTTCCAGGTCACCGAGCTCGCCGACGGCGTCTTCATCGGCTGCGCCGTCTGCCACGCTGTCACCGACGGTGCCTCCTTCTGGAACTTCTTCAACACCTTTGCCGAAGTCTCCAGGGGAGCCACGTGTCCCTCCATCAGGCTCCCGGATTTCCGCCGGGAATCCATCCTGGTTTCCAAAGTCGTGCTTCAGTTGCCGGAAGACTTCAAGGTCACCTTTGACGCCGACGAGCCGTTTCGCGAGAGAATCTTCAGCTTCAGCCCGGAATCAATTCAGAAGTTGAAAAGCATGGTGAACAATCGCCGGACAGCGATTCCACCGGAGAACGTTGACGCAGTTGAGATGCTGGCGAAGCTGAGCAGCGACACGCGGCTGAAAACGGTTACGCGAGGCGTAACTGACGAAACGGCGGAGATTTCGTCGTTTCAGTCGCTGTGCGCGCTGGTGTGGCGCTGCGTGACGAGGGCGAGGAATCTCGAGGGGTCGAAAGCGACGACGTTTAGAATGGCGGTTAATGTTCGCCAGCGCATGGAGCCCAAGTTGGGGGATTGTTACTTCGGGAACGCGATTCAGAGCATTGCCACGTGTGCTGCAGCGGGTGACGTGGCGAATAAGGACCTTCGGTGGTGCGCGGAGCAGCTGAACAAAAGGGTGAGGGCGTACGATAGCGCTATGGTGCGGCGCGCCGTGGAGAATTGGGAGCGTGAGCCCAAGTGCTTCGAGTTGGGGAACCACGACGGCGCCACCGTGCAGATGGGTAGCTCGCATAGATTTCCGATGTACGACAATGATTTTGGATGGGGGAGGCCCCTGGCGGTGCGTAGCGGCGGAGCCAACAAATTTGACGGCAAGATGTCGGCGTTTCCCGGGAGGAATGGCGGTGGCGCCGTCGATTTGGAGGTGGTTTTGGCGCCTGACACGATGGCGCGACTCGAGTCTGATCCTGAGTTCATGTTTTATGCGTCTGGTTAG 1401 0.5903 MPSSALTVHSKCTVVPHQNSTLGDLKLSISDLNMLLSHYIQKGCLFPTPSLPSRTLIPHLTNALSRTLSLFPPFAGRLKTDADGYVYIACNDAGVEFVHASAAAAGDISVSDLLSPPDVPPAFKQLFPFHHKISHTAHSSPIMAFQVTELADGVFIGCAVCHAVTDGASFWNFFNTFAEVSRGATCPSIRLPDFRRESILVSKVVLQLPEDFKVTFDADEPFRERIFSFSPESIQKLKSMVNNRRTAIPPENVDAVEMLAKLSSDTRLKTVTRGVTDETAEISSFQSLCALVWRCVTRARNLEGSKATTFRMAVNVRQRMEPKLGDCYFGNAIQSIATCAAAGDVANKDLRWCAEQLNKRVRAYDSAMVRRAVENWEREPKCFELGNHDGATVQMGSSHRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGAVDLEVVLAPDTMARLESDPEFMFYASG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1569 466 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 464 - -
Ssu9g1569 466 Gene3D - 6 210 IPR023213 -
Ssu9g1569 466 Gene3D - 211 456 IPR023213 -
Ssu9g1569 466 Pfam Transferase family 6 461 - -
Ssu9g1569 466 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1569 Ssu-Chr9 51913962 51915436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1569 30 462 Monolignol Biosynthesis Gene Families AT5G48930 29.054 2.14e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1569 - - gmx:100792476 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3008 6 69030213 69031718 Ssu9g1569 9 51913962 51915436 PCT