Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1565 ATGGAATTCGAGACTCCATATCCTACTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAGAGGGCCACTACACAGAATGGACTAGAGAAGAGAATAAGAAGTTTGAGAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGCTGAGGGTGGCAGCCATGCTCCCTGGGAAAACAGTCGATGATGTGATCAAACAGTACAAGGAATTGGAAGAAGATGTTACTGAAATAGAAGCAGGTAGGATTCCCGTTCCTGGATATCCTACCTCTTCTTTCACATTGGAGATGGTTGACAACCAATATTATGATGGATGCAGAAAGAGGCCTGCAACTGTCAGGAGTTCTGATCAGGAGAGGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTAAAGTATGGAAAAGGGGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAACAAAAGGAGACCTAGTATCCATGATATCACCATTGTTAATCTTACATCAGATCAAGATAAGCCTCTTTTATTCAATGAGTCTTACATGCCTTCAGAGCAACAGAAGCTGACTAGCATGCCAAAAGTACAACTCGATTGGATTAATCGCCACAACAATGGGTCACTTATGGTTTTCAACCCAAATTATGATATGTTCATGTCACCTTCATCTGGCATCTCTTCCAAGACCCTCAAGTTGCAAGGGCAGGATCTCCATGACTGTGCTTTTCATGAGACTTATGCCAAGCTTAAAACTCCGGGTTTCAGGACAGCTTCTAGAGACTTCGACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 906 0.4249 MEFETPYPTCFMSNSNWFVQEGHYTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGKTVDDVIKQYKELEEDVTEIEAGRIPVPGYPTSSFTLEMVDNQYYDGCRKRPATVRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQDKPLLFNESYMPSEQQKLTSMPKVQLDWINRHNNGSLMVFNPNYDMFMSPSSGISSKTLKLQGQDLHDCAFHETYAKLKTPGFRTASRDFDKEAIFGIHAL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1565 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Ssu9g1565 301 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Ssu9g1565 301 CDD SANT 126 170 IPR001005 -
Ssu9g1565 301 Gene3D - 20 86 - -
Ssu9g1565 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Ssu9g1565 301 ProSiteProfiles SANT domain profile. 25 77 IPR017884 -
Ssu9g1565 301 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 282 - -
Ssu9g1565 301 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Ssu9g1565 301 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Ssu9g1565 301 Gene3D - 125 176 - -
Ssu9g1565 301 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Ssu9g1565 301 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 282 IPR043363 -
Ssu9g1565 301 Coils Coil 62 82 - -
Ssu9g1565 301 SMART sant 23 75 IPR001005 -
Ssu9g1565 301 SMART sant 123 173 IPR001005 -
Ssu9g1565 301 CDD SANT 26 72 IPR001005 -
Ssu9g1565 301 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Ssu9g1565 301 ProSiteProfiles Myb-like domain profile. 27 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1565 Ssu-Chr9 51787217 51788704 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g1565 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1565 - - gmx:100783469 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1565 9 51787217 51788704 Ssu6g3002 6 68825856 68827288 PCT