Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1548 ATGACCCAACAAGACCGCAGAGTGAAGGGGCCCTGGTCGCCGGAGGAGGACGCCGTGCTGACCCGTTTGGTGGCCCATTTCGGGCCGAGGAACTGGAGCATGATCGCCGGCGGAATACCCGGTCGTTCCGGCAAGTCCTGTCGTCTCCGCTGGTGTAACCAACTCGACCCTTCCGTCAAACACAAACCCTTCACCGTGTGTATTAGAATCTACCCTGTGCCGCTTTTCAGAACAAATGTGTCTTCTAATGAAAAGTGCATTGCTGCAGAGGACGAGGATCGTATTATAGTTGCAGCCCATGCAGTCCATGGAAACAAATGGGCAGCAATTGCAAAACTTCTTCCAGGTAGAACAGATAATGCTATTAAGAACCACTGGAATTCTGCTCTAAAGCGCAGGTTTATGGAGTTAGGAAAATATGTCCCAGCACATGTTTATGTGGCAGAAGTTCGTAGCTTTGAGAAAACAAAGGCATCCACTGAAGAAACtatgtacagttga 501 0.487 MTQQDRRVKGPWSPEEDAVLTRLVAHFGPRNWSMIAGGIPGRSGKSCRLRWCNQLDPSVKHKPFTVCIRIYPVPLFRTNVSSNEKCIAAEDEDRIIVAAHAVHGNKWAAIAKLLPGRTDNAIKNHWNSALKRRFMELGKYVPAHVYVAEVRSFEKTKASTEETMYS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1548 166 SMART sant 8 57 IPR001005 -
Ssu9g1548 166 SMART sant 84 132 IPR001005 -
Ssu9g1548 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 59 IPR017930 -
Ssu9g1548 166 CDD SANT 11 53 IPR001005 -
Ssu9g1548 166 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Ssu9g1548 166 Pfam Myb-like DNA-binding domain 90 129 IPR001005 -
Ssu9g1548 166 ProSiteProfiles Myb-like domain profile. 4 55 IPR001005 -
Ssu9g1548 166 CDD SANT 90 127 IPR001005 -
Ssu9g1548 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 134 IPR017930 -
Ssu9g1548 166 SUPERFAMILY Homeodomain-like 9 131 IPR009057 -
Ssu9g1548 166 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 5 164 - -
Ssu9g1548 166 Gene3D - 89 133 - -
Ssu9g1548 166 PANTHER MYB PROTEIN-RELATED 5 164 - -
Ssu9g1548 166 Gene3D - 8 60 - -
Ssu9g1548 166 ProSiteProfiles Myb-like domain profile. 89 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1548 Ssu-Chr9 51551679 51553843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1548 7 152 MYB Transcription Factor Family AT3G55730 57.718 4.85e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g1548 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1548 K09422 - gmx:100781228 220.32