Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1546 ATGAAGATCCTCAAAATGTCGCTTGCAGAGGACAAGTCTCACGTTGTTGTTGTCGCTAACATTGACAATGGTTGTCCTCCCCGGAGCTTGGTCGGCCGCGGCAGCGTAGGGTGTTCCGAGATTGTGCGAGTGTCTGAAAATGAGAGGGGATCCTCTGTGTCGGAGTGTTGTGTGGAGGTGGATCCGGTGCCTGATGCGAAGGTACATTTGGATATGGTGAAGAGGAATTGCAGGATTTGCCACCTCAGCATGGACATGACCGACCATAACAATGAATCTGGGACTGTCAATCCCATTGAGCTGGGATGTTCTTGCACAGAGGATTTGGCTGCTGCACACAAGCACTGTGCTGAGACTTGGTTCAAGATCAAGGGTAACAAAATTTGTGAAATCTCTGGATCCATTGCAAGCAATGTAGCTGGTGTAGTTGAAGTCGAAACAACTGAACATTGGAATGAAGCAAATAATGATGCCTCCACGGTACCACCAACTGGACCCGCCTCCCCAGCAGAAACTCGACATTTTTGGCAGAGTCACCGATTCTTGAATTTCCTTCTTGCCTGTATGGTCTTTGCTTTTGTCATTTCCTGGCTTTTTCACTTCAATATGCCCTCATGA 618 0.4806 MKILKMSLAEDKSHVVVVANIDNGCPPRSLVGRGSVGCSEIVRVSENERGSSVSECCVEVDPVPDAKVHLDMVKRNCRICHLSMDMTDHNNESGTVNPIELGCSCTEDLAAAHKHCAETWFKIKGNKICEISGSIASNVAGVVEVETTEHWNEANNDASTVPPTGPASPAETRHFWQSHRFLNFLLACMVFAFVISWLFHFNMPS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1546 205 Pfam RING-variant domain 77 131 IPR011016 GO:0008270
Ssu9g1546 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 140 IPR013083 -
Ssu9g1546 205 PANTHER ZINC FINGER, RING-CH-TYPE 38 205 - -
Ssu9g1546 205 ProSiteProfiles Zinc finger RING-CH-type profile. 69 139 IPR011016 GO:0008270
Ssu9g1546 205 SMART ringv_2 76 133 IPR011016 GO:0008270
Ssu9g1546 205 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 38 205 - -
Ssu9g1546 205 SUPERFAMILY RING/U-box 73 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1546 Ssu-Chr9 51542028 51543848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1546 16 205 C3H Transcription Factor Family AT5G05830 58.081 1.55e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1546 - - gmx:100818979 263.077