Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1529 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGTATATACGGGGACTTTGTTTCTTCATACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGgcaagattttcaaaattgggTCCAGTAGAGGAAGTGATGGTGGTCGTCATCTGCAGCAGCCTGTGGAGGAAAACATGGTTTGGCCAGCTCCAGCTAGATCGTTGGATGACCGTGCTAGATCTCGGAAGGAGGAAGAGGATCTGGACCATGCAATTGCACTTTCTTTAGGCGAAGGTTTAAAGAGACCAGCTGGATATAGATGGCGGACAGAAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCTTGTTCTCATCTGCATATCCTCCATATGCCTCTGTACCTTTTTATCCCCGGGGAAATTGTGTGCCATCGCATATCAGAATATGTGGAGGGTGCAACCAAGAGATATTTTATGGCAATTGTTTAGGAGTTGGGAATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTATTGTTGTTGCCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAATTGACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGGTGCTGGTTTGATTGAGTATAGATGCCACCCCTATTGGAACCAAAAGTACTGTCCATCTCACGAATATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCGCGGGACGAAAGATACTTTAGATTGGAAGATGGACGGATTTTGTGCTTTGAGTGCATGGAATCTGCCATAACAGACACTGGTGAATGTCAGCCTCTTTATCATGCTATTAGAGACTATTATGAAGGAATGAATATGAGAATAGACCAACAAATCCCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCTATTGTTGGAGAGAAGAATGGTTTCCACCACTTACCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTTTATAGATGGCCAAGAATTGGAGGCCATCGATTAATAGGGATGAAATCTCAACATCATAAGCTCCCTAGAACATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCAAAACCTTAGTCCTGAAGTGGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAGGTGATGTCAGGTGCTAGAAGCATGCCATCAACATCATCAGCTTCTTCCTCTTACTCATCAAAGAAAGGTGCGAAGTCTCATGGTGAAAATAAATTGGGAAAATTTTTCATGAACCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCAGCTAATCAAGCTGTGAATAAATATGGTTTACGTTGTACTCTGGAGCATGTTCGTATGACTGGTCAATTCCCACTGTAA 1518 0.4196 MAPPSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSSRGSDGGRHLQQPVEENMVWPAPARSLDDRARSRKEEEDLDHAIALSLGEGLKRPAGYRWRTETDEDYAKALQDRLFSSAYPPYASVPFYPRGNCVPSHIRICGGCNQEIFYGNCLGVGNSYFHPDCFRCHYCCCPITEREFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINGAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRDERYFRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPRIGGHRLIGMKSQHHKLPRTCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEVEEGICQVLSYMWLDAEVMSGARSMPSTSSASSSYSSKKGAKSHGENKLGKFFMNQIANDSSPAYGGGFRAANQAVNKYGLRCTLEHVRMTGQFPL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1529 505 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Ssu9g1529 505 PANTHER PROTEIN DA1-RELATED 2 20 505 IPR045218 -
Ssu9g1529 505 CDD LIM_DA1 145 197 - -
Ssu9g1529 505 Pfam LIM domain 145 198 IPR001781 -
Ssu9g1529 505 Pfam Protein DA1 294 500 IPR022087 -
Ssu9g1529 505 SMART lim_4 144 196 IPR001781 -
Ssu9g1529 505 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 505 - -
Ssu9g1529 505 Gene3D Cysteine Rich Protein 133 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1529 Ssu-Chr9 51150644 51155381 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu9g1529 DA1-like 1.2e-93 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1529 - - gmx:100798829 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1529 9 51150644 51155381 Ssu6g2968 6 68099867 68104545 PCT