Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1524 ATGCCACCATTCATTTGTCCatatatattatacacacacGACTATGAATATGCACTACAACTACAACCTTCACCCCCCAATGGACTCCACGGCGAGGCTCTTCCTCTTGGCGGCGgcgctgctgctgctgctgctatCACGCGCGACGCAGGTGTCGTCCGCGACGCCGTGTCCCCCGTGCGGCAACACGACGGTGCCGTTTCCCCTGAGCACAACCGCGACGTGCGGCGACCCGTCGTACAAAATCCGGTGCAGCAGTTCGGGCACGCTGTCGACCCGAAGGCCCAGCGGTTCGTGATCCGGCCCGCGGCGCTCGAGCCCAACACGTGCGTGTCCACCGACAAGGTCCACCAAGGGATCCAGCTCAACAGCACCCTCCCCTTCAACATCACGAGCTCCAACACCATCGTTTACCTGAACTGCACCCTCACGCTCCTCCAGTCCCCGCTCAACTGCTCCGCCGCCAGCGCCTGCCACAGCTACATCAACGCCACCGCCTCTGCCTCCGCGTGCCAGACGGGGCCGCTCTGCTGCACCTACCGCACCGGCGGGTCTAGCAACTCTTACATGATTCGTGTGAGGGACTCCGGCTGCAGCGCTTACTCCAGTTTTGTTAACCTCAACCCGGCTCTCCCAGTGAACCGCTGGCCCCAACCGGGTTTGGAGATTCAGTGGCAGTCGCCCAGGGAAACCGTGTGTGGGTCCCAGGCCGATTGCGACTCTGCCACGTCGACCTGTGGGCCCGATGCTTCTTCTGCGCGTGGGATCAAGAGGTGCTTTTGTAACACCGGGCTCGTCTGGGACCCTATTCAAGGGGTGTGCGCGGAAAAAATTACTTGCCAGAACACTGATGGTTGTGGCGACTCAACAAACAGAACGGTTATAATTGCAGGTTCAGTATGCGGGGCTGGAGCTGCACTCATCCTTGCCATCATAGCCTTTTTGCTCTACAAACGCCACAAGCGCATCCAAGAAGCACGAGCACGGCTAGCCAAAGAGCGTGAAGGAATTCTGAATGCCAGTGGTGGGGGCAGAGCCGCTAAACTTTTCAGTGgcaaagagataaagaaagcCACAAACGACTTCTCCAATGATCGGCTTCTCGGTGTTGGTGGCTATGGTGAAGTCTACAAGGGCATTCTTCAAGATGGCACTGTTGTGGCTGTCAAGTGTGCCAAGCTTGGCAACCCCAAAGGCACTGACCAAGTCCTCAACGAGGTTCGCATATTATGCCAAGTTAACCACCGCAACCTTGTTGGTCTACTCGGTTGCTGCGTGGAACTGGAACAGCCCATTATGGTTTATGAGTTCATAGAAAATGGGACCCTTCTTGATCATTTGCAAGGTCAAATGCCTCAGGGCCGTGACTTGCTTACTTGGACTAATCGCCTTCAAATTGCGCGTCACACTGCTGAGGGTCTTGCTTACCTTCACTTCATGGCTGTGCCTCCTATCTATCATAGAGATGTCAAGTCCAGCAATATTCTGCTAGATATCAAGCTGAATGCCAAGGTTTCAGATTTTGGGTTGTCTAGGTTGGTTCAGACAGATATGAGTCACATCTCAACTTGTGCTCAGGGGACCCTTGGGTATCTTGACCCTGAGTATTATAGGAACTACCAATTGACTGATAAGAGTGATGTTTACAGTTTTGGGGTGGTGCTGCTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGGCAGCAGATGATGTGAACTTGGCAGTTTATGTGCATCGGATGGTGGCGGAGGAAAAGTTGATGGATGTCATTGATCCAGTGTTGATGAATGGAGCTACCACTATAGAGCTAGAGACCATGAAGGCGGTGGCATTTCTGGCATTGGGTTGCTTGGAGGAAAAGAGACAGAACCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCCTCAGCAAAGGTAGTGGAGTAG 1953 0.5207 MPPFICPYILYTHDYEYALQLQPSPPNGLHGEALPLGGGAAAAAAITRDAGVVRDAVSPVRQHDGAVSPEHNRDVRRPVVQNPVQQFGHAVDPKAQRFVIRPAALEPNTCVSTDKVHQGIQLNSTLPFNITSSNTIVYLNCTLTLLQSPLNCSAASACHSYINATASASACQTGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLNPALPVNRWPQPGLEIQWQSPRETVCGSQADCDSATSTCGPDASSARGIKRCFCNTGLVWDPIQGVCAEKITCQNTDGCGDSTNRTVIIAGSVCGAGAALILAIIAFLLYKRHKRIQEARARLAKEREGILNASGGGRAAKLFSGKEIKKATNDFSNDRLLGVGGYGEVYKGILQDGTVVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGQMPQGRDLLTWTNRLQIARHTAEGLAYLHFMAVPPIYHRDVKSSNILLDIKLNAKVSDFGLSRLVQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRAADDVNLAVYVHRMVAEEKLMDVIDPVLMNGATTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKVVE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1524 650 SMART serkin_6 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1524 650 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 90 646 IPR045274 GO:0007166
Ssu9g1524 650 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Ssu9g1524 650 PANTHER OS05G0318100 PROTEIN 90 646 - -
Ssu9g1524 650 Gene3D Transferase(Phosphotransferase) domain 1 438 648 - -
Ssu9g1524 650 Gene3D Phosphorylase Kinase; domain 1 325 437 - -
Ssu9g1524 650 CDD STKc_IRAK 368 638 - -
Ssu9g1524 650 Pfam Protein tyrosine and serine/threonine kinase 365 636 IPR001245 GO:0004672|GO:0006468
Ssu9g1524 650 SUPERFAMILY Protein kinase-like (PK-like) 347 637 IPR011009 -
Ssu9g1524 650 ProSiteProfiles Protein kinase domain profile. 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1524 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1524 Ssu-Chr9 51078590 51081871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1524 90 650 Receptor kinase-like Gene Family AT5G02070 53.484 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Ssu9g1524 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1524 - - gmx:100305415 1031.94