Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1516 ATGGCTGGAATTTGCTGTGGTGTTGTTGGAGAAGGTGACACTCCGGCTCCACTCGAGCCAACTCCTCGCCCCTCCAGGCGCCGGAGTCTGGACCTTCTACCGTTAAAATACATCGCCGACATGGCAGTGCCGCCGCCGGAGGGTTCACGGAAACGTCCGAAGCTGGATCTCAGTTATTGCGTAAACGCAGTTGAAAATTGCGAGGAATCCGCCGGACACAAGGTGGCGAAGAAGGAATCCAAGCTAGACGACGTCGTTTCGGGAAAGGAAACCGTAACGGTTGCGGATTCTTCCGAAGTCGAACAGTGTCCGAAGTTCGGCGTGACGTCCGTTTGCGGCAGGAGAAGAGACATGGAAGATTCCGTTTCGGTGCGGCCTTGCTTCTCGCAACAAGGCCTCCACTACTTCGGCGTCTTCGACGGTCACGGTTGCTCTCATGTTGCGACGATGTGCAAGGAGCGGCTTCACGAGATTGTGAACGAGGAGATTCTCGGCGCGCGCGAGAATTTGGAGTGGAAATCGACTATGGAGAACGGATTCGCTCGCATGGACGACGAGGTTCTGCGCGGGAGCCAGAGCAACCAGACCTTCTCCTGCAGGTGCGAGCTTCAGACTCCTCATTGCGACGCCGTCGGATCCACCGCCGTCGTCGCCGTTGTCACGCCGGACAAACTCGTCGTCTCCAACTGCGGAGACTCCCGCGCCGTCCTCTGCCGAAACGGCGTCGCCATCCCCCTCTCCTCCGATCACAAGCCTGACCGACCCGACGAATTGCTCCGAGTCCAAGCCAAGGGAGGGCGCGTGATCTATTGGGACGGCCCAAGAGTGCTTGGAGTGCTAGCCATGTCTCGTGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCGGAGCCGGAGGTGACGGTGACGGAACGGACGGAGGAGGATGAGTGTTTGATACTGGCGAGTGATGGGTTGTGGGATGTGGTGTCGAATGATACTGCTTGTGGGGTGGTGAGGATGTGCCTCAAGGCGCAGAAGCCTCCGCTGCCGCCGGGGTCTCCGGGGAGTGACGTGGCGGCGGACGGGTCGGACCGGGCTTGCTCCGATGCGTCGATTCTGTTGACTAAGTTGGCGTTGGCGAGGCATAGTTCGGATAATGTGAGTGTGATGGTGGTTGATTTGAGGAGAGATCAACGCAATTGCAACGAGAATTAA 1200 0.58 MAGICCGVVGEGDTPAPLEPTPRPSRRRSLDLLPLKYIADMAVPPPEGSRKRPKLDLSYCVNAVENCEESAGHKVAKKESKLDDVVSGKETVTVADSSEVEQCPKFGVTSVCGRRRDMEDSVSVRPCFSQQGLHYFGVFDGHGCSHVATMCKERLHEIVNEEILGARENLEWKSTMENGFARMDDEVLRGSQSNQTFSCRCELQTPHCDAVGSTAVVAVVTPDKLVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAKGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTEEDECLILASDGLWDVVSNDTACGVVRMCLKAQKPPLPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVMVVDLRRDQRNCNEN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1516 399 Gene3D - 100 397 IPR036457 -
Ssu9g1516 399 SMART PP2C_SIG_2 117 389 IPR001932 -
Ssu9g1516 399 Pfam Protein phosphatase 2C 106 381 IPR001932 -
Ssu9g1516 399 CDD PP2Cc 105 389 IPR001932 -
Ssu9g1516 399 SMART PP2C_4 93 387 IPR001932 -
Ssu9g1516 399 ProSiteProfiles PPM-type phosphatase domain profile. 105 389 IPR001932 -
Ssu9g1516 399 PANTHER ALPHABET, ISOFORM E-RELATED 24 394 - -
Ssu9g1516 399 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Ssu9g1516 399 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 24 394 - -
Ssu9g1516 399 SUPERFAMILY PP2C-like 102 390 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1516 Ssu-Chr9 50980871 50982389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1516 1 395 PP2C-type Phosphatase Gene Family AT3G11410 59.804 1.22e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1516 K14497 - gmx:100776356 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1516 9 50980871 50982389 Ssu6g2951 6 67911037 67912736 PCT