Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1505 ATGGAGGAATCTCAGTACTTGATGTGGATcaagagaaaacaaatcttGAAGTCACATATTCAACAACCATTTGGAGccggcaacaacaacaactcatcaTGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGTATATGGCCTCCAAGATCTTACtcatgtaatttctgcaaaagaGAGTTTAGGTCTGCTCAGGCTCTAGGGGGCCACATGAATGTGCACAGGAGGGACAGAGCTAGACTCAAACAAAGTCTTAGTCCCCATAATGAAGcccttcaacatcatcacaaaAATGATTGTACAGTTGCAACTAGCAAAGTCTCATCTTCTAGGCCCTCAACTATATCCACCCAAGAAAATTGTTATCAGCCTACCATGTCTCCTTATTCTTCTTCGATTAGCTGGGGACACCACATGGGGTCTCCTGATTCAGAACCAAAAGGGCCAGAAAATGCAAGGgaagaattttcaaaatgtttggGTTGTAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAATTACCAATTGCTTCATGTGAGGACGAAGCCATCTGTTATAAAAGATCAAAGACTTCTATACCTTCTTTGCCTGTCTTCCTCAAGCCATGTTCAAATGATAGACACCTAACTTTTCAGTCTGCAGAATTCGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAACAACAGAAAGTTATTTAG 762 0.3714 MEESQYLMWIKRKQILKSHIQQPFGAGNNNNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSPHNEALQHHHKNDCTVATSKVSSSRPSTISTQENCYQPTMSPYSSSISWGHHMGSPDSEPKGPENAREEFSKCLGCNDYVETSLSVGQSSVFGQKLPIASCEDEAICYKRSKTSIPSLPVFLKPCSNDRHLTFQSAEFVLGLKPGMEDLDLELRLGKQQKVI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1505 253 MobiDBLite consensus disorder prediction 107 126 - -
Ssu9g1505 253 PANTHER OS07G0101800 PROTEIN 1 253 - -
Ssu9g1505 253 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Ssu9g1505 253 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Ssu9g1505 253 Pfam C2H2-type zinc finger 57 81 - -
Ssu9g1505 253 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 253 - -
Ssu9g1505 253 MobiDBLite consensus disorder prediction 92 106 - -
Ssu9g1505 253 MobiDBLite consensus disorder prediction 138 157 - -
Ssu9g1505 253 MobiDBLite consensus disorder prediction 92 126 - -
Ssu9g1505 253 SMART c2h2final6 57 79 IPR013087 -
Ssu9g1505 253 Gene3D Classic Zinc Finger 54 119 - -
Ssu9g1505 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1505 Ssu-Chr9 50816270 50817112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1505 28 126 C2H2 Transcription Factor Family AT2G37740 50.459 5.18e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu9g1505 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1505 - - gmx:102663477 441.039