Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1502 ATGGCGAATCGTTGGTGGGCTGGGAATGTGGGAATGATAAGAGAGCAAGAGTTGAtggacgacgacgacgacgacaacaacaacaacaacaacaacgcgAACGCTACTACTACTACTCCGACGAATAGCAGCAACAGCAACACTAACGCGAACACCAACACGACGGAGGAAGAGGTGAGCAGGGACAACGGtgaggaccaaaaccaaaacccgGGCAGCCAGGAAGGTTCGGAGCCGGGAAGCAGCGGGCGGAGGCCACGTGGCAGGCCTCCGGGGTCGAAGAACAGGCCCAAGCCGCCCATCGTCATAACCAAGGAGAGCCCCAACGCGCTCCGGAGCCACGTGCTGGAAATCGGCAGCGGCAGCGACGTCGCCGAGAGCATCGCCGCCTTCGCGAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGGAGTGGCATTGTCACCAACGTCACGCTCCGCCAACCGGCAGCACCCGCGGGAGTCATCACCCTTCACGGAAGGTTCGAGATACTCTCCCTCTCCGGCGCGTTCTTGCCCTCTCCCTCGCCTCCCGGCACCACCGGGCTCACCGTGTATTTAGCCGGCGGCCAGGGGCAGGTTGTCGGCGGCACAGTGGCTGGTTCCCTGGTGGCTTCCGGGCCGGTGATGGTGATCGCCGCCACTTTTGCTAATGCTACTTATGAGAGGTTGCCGCTGGAGGACGAGCCAGGTGAGGAAGAAATGCAAgtgcaacagcaacaacaacaacaatctcAGGGTTTGGGTGAACAGGTTTCAGTGCCAATGTATAATTTGCCCCCCAATTTGCTACACAATAATGGTCAGAACATGCCTCATGATGTGTTCTGGGGAGCTCCACCTCGTCCTCCTCCTTCTTTCTGA 885 0.5424 MANRWWAGNVGMIREQELMDDDDDDNNNNNNNANATTTTPTNSSNSNTNANTNTTEEEVSRDNGEDQNQNPGSQEGSEPGSSGRRPRGRPPGSKNRPKPPIVITKESPNALRSHVLEIGSGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGTTGLTVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEPGEEEMQVQQQQQQQSQGLGEQVSVPMYNLPPNLLHNNGQNMPHDVFWGAPPRPPPSF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1502 294 CDD DUF296 112 223 IPR005175 -
Ssu9g1502 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 294 - -
Ssu9g1502 294 MobiDBLite consensus disorder prediction 236 259 - -
Ssu9g1502 294 MobiDBLite consensus disorder prediction 16 108 - -
Ssu9g1502 294 PIRSF ESCAROLA 21 293 IPR014476 GO:0003680
Ssu9g1502 294 ProSiteProfiles PPC domain profile profile. 108 245 IPR005175 -
Ssu9g1502 294 MobiDBLite consensus disorder prediction 65 80 - -
Ssu9g1502 294 MobiDBLite consensus disorder prediction 28 57 - -
Ssu9g1502 294 Gene3D - 111 253 - -
Ssu9g1502 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 294 IPR014476 GO:0003680
Ssu9g1502 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Ssu9g1502 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 235 - -
Ssu9g1502 294 MobiDBLite consensus disorder prediction 242 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1502 Ssu-Chr9 50787210 50788094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1502 1 294 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.165 3.01e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1502 - - gmx:102667174 405.601