Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1495 ATGATGTCTTCGGGGACATCCTCGTACTGGTGCTACAGATGCAGCCGCTTCGTCCGCGTGGGGCGCCAGGACACCGTGGTCTGTCCCGACTGCGACGACGGATTCATCGAACAAATCGACCACCCCGCGCGCCCCCTCCACGTCGACGCCCGCCGCCGCCGCTTCCCCGCCGCGGCCATGTACATGATCGGCCAACGCCCCGGCTCCGACCAGACCTCCCGCCCAACCCTCCGCCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCCGTGATCGTCCTCCGCGGCGGCGCGGAGGACGGCGGCGAGAGTCGCGGGTTCGAACTCTTCTACGACGACGGCGCCGGCTCCGGTCTGAGACCCCTGCCTCCGAGCATGTCAGAGTTTCTTCTCGGATCTGGGTTCGACAGGCTCTTGGAGCAGCTTTCTCAGATTGAGATCAACGGTATTGGGAGGTACGAGCACCCTCCCGCGTCAAAGGCAGCCATTGATTCGTTGCCCACGATTGAAATTGACGGCACGCACTTAGCGATGGAGTCACACTGCGCGGTTTGCAAGGAGGCTTTCGAGTTAGGCACTGCGGTGAGGGAAATGCCGTGTAAGCACATATACCACCCGGAATGCATATTACCGTGGCTCGCGCTTCACAATTCTTGCCCCGTTTGTCGGCACGAGTTACCCGCTGATACCCAAAACCCGGGTCCAAATCCACTGCAAGGGAATAATGTTGCGTTGAACGAGGAAGAGAACGTGGGGTTGACGATTTGGAGGCTGCCCGGTGGAGGGTTTGCTGTCGGGAGATTCTCCGGCGGGAGAAGAGGTGCTGAGAGAGAGCTTCCTGTGGTTTACACCGAGATGGATGGTGGGTTTAATAATGGGGGTGAGCCTAGGAGGATTTCTTGGTCTTCTAGAGGGAATAGAGGAAGGGAGGGTGGGGGGTTGAACAGGTTTTTCAGGAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGGAAATGGGAGTAGTAGTGCTACTCAGCGTTCTTCTTCTAGTAGAGAGTCTTTGAGGGCGAGTTCGTCTCGTTCTAGCATGGATCCCTCTCCGCGTTCCCGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCGTGGTAG 1140 0.5886 MMSSGTSSYWCYRCSRFVRVGRQDTVVCPDCDDGFIEQIDHPARPLHVDARRRRFPAAAMYMIGQRPGSDQTSRPTLRRTRRNGGDRSPFNPVIVLRGGAEDGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDGTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADTQNPGPNPLQGNNVALNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGREGGGLNRFFRNLFGCFRGGVGNGSSSATQRSSSSRESLRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1495 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 231 IPR013083 -
Ssu9g1495 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 3 325 - -
Ssu9g1495 379 Pfam Protein of unknown function (DUF1117) 253 358 IPR010543 -
Ssu9g1495 379 CDD RING-H2_RNF126_like 184 225 - -
Ssu9g1495 379 SMART ring_2 184 224 IPR001841 -
Ssu9g1495 379 MobiDBLite consensus disorder prediction 332 379 - -
Ssu9g1495 379 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Ssu9g1495 379 Pfam Ring finger domain 183 225 IPR001841 -
Ssu9g1495 379 MobiDBLite consensus disorder prediction 332 371 - -
Ssu9g1495 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 325 - -
Ssu9g1495 379 MobiDBLite consensus disorder prediction 64 94 - -
Ssu9g1495 379 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Ssu9g1495 379 SUPERFAMILY RING/U-box 164 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1495 Ssu-Chr9 50675780 50676919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1495 123 234 C3H Transcription Factor Family AT5G01980 41.071 4.88e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1495 - K11982 gmx:100784364 600.127