Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1485 ATGGCTTTCCGTAATAGAATACTATGCTTCATCACCTTTACTTGTCTCCTGCAATTAACAAATCCTTCAAACTTGAATGGCGACACGTTACTCCAAGGTCATCAGATCACAATAACTGACAGTTTGATTTCATCTTCAGGTATGTTCACACTGAGTTTCTTTCAGTTTGATAAATCTGAAGATTTCTACCTGGGAATTAGACTCTCAGTCTCAGCCAATAGTTCTAGTTATTACTGGATTGCCAATAGAGACAAGCCAATCCATGACCATGCAGGGGTTCTCACAATCGATCAATACGGAAGCTTGAAAATTGTTTCCAATGGGGGAAATTCCACTATAGTGCTCTATTTTGCTGATGCTGCAAGTAACAACAGTATTAGTGCCGTCTTGCAAGATGCTGGCAACTTTGTGCTTCGTGAAATGAATCCAGATGGAACTGTGAAGAGGGAATTATGGCAAAGCTTTGACTATCTTACAGACACAATTATACCAGGGATGAAGCTAGGTTCGACAACTGCACCTGGGCGTCAAATTTACTTCATTCGCAGTGGAAAAGCTAAAATGCGAAAGAATCGAAACAATTTATTATCAGATATTGGAAGAAACACTGCTATTTCCATTGCATACggtgaaagaagagaaaagaggaaAGATGAAGAGACAAGCGATGAAACATATATATTCGACTTTCAAACTATTCTTGAGGCAACTGCTAATTTTTCTTCCACCAATAAGATCGGGGAGGGAGGCTTTGGACCTGTCTACAAggGGAAGCTGCCAAATGGACAAGAAATTGCTATAAAGAGACTATCCAAAGGTTCAGGACAGGGGTTGAATGAGTTCAAAAATGAAGCAATGCTAATTGTCAAACTTCAGCACACTAATCTAGTGAGGCTTCTTGGATTTTGTAtagacaaagaagaaagaatattaGTCTACGAGTATATGCCCAACAAAAGCTTGAATTTATATCTCTTTGGTATAGAAATTTACTCATTCAGTGTTTCATTTACATTTTAG 1020 0.3686 MAFRNRILCFITFTCLLQLTNPSNLNGDTLLQGHQITITDSLISSSGMFTLSFFQFDKSEDFYLGIRLSVSANSSSYYWIANRDKPIHDHAGVLTIDQYGSLKIVSNGGNSTIVLYFADAASNNSISAVLQDAGNFVLREMNPDGTVKRELWQSFDYLTDTIIPGMKLGSTTAPGRQIYFIRSGKAKMRKNRNNLLSDIGRNTAISIAYGERREKRKDEETSDETYIFDFQTILEATANFSSTNKIGEGGFGPVYKGKLPNGQEIAIKRLSKGSGQGLNEFKNEAMLIVKLQHTNLVRLLGFCIDKEERILVYEYMPNKSLNLYLFGIEIYSFSVSFTF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1485 339 Pfam D-mannose binding lectin 78 179 IPR001480 -
Ssu9g1485 339 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 174 IPR036426 -
Ssu9g1485 339 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Ssu9g1485 339 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 175 - -
Ssu9g1485 339 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 204 330 - -
Ssu9g1485 339 Gene3D - 23 155 IPR036426 -
Ssu9g1485 339 ProSiteProfiles Protein kinase domain profile. 240 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1485 339 Gene3D Phosphorylase Kinase; domain 1 202 315 - -
Ssu9g1485 339 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 73 175 - -
Ssu9g1485 339 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 204 330 - -
Ssu9g1485 339 Pfam Protein tyrosine and serine/threonine kinase 243 325 IPR001245 GO:0004672|GO:0006468
Ssu9g1485 339 SMART blect_4 27 158 IPR001480 -
Ssu9g1485 339 SUPERFAMILY Protein kinase-like (PK-like) 219 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1485 Ssu-Chr9 50275818 50279086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1485 212 329 Receptor kinase-like Gene Family AT4G23190 59.322 1.28e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu9g1485 B_lectin 5.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1485 - - pvu:PHAVU_001G233000g 249.98