Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1475 ATGGGTTGCTGCTTTAGTGTACCTCCAAAAATCAAAGCTGAGAGCCCTCCACGTAATGGTTTGAATTTAAAGGATGGTAGCAAAGAAGAGAATGGTTTGAGTTTAAGCAGCAAGGTGTCCTCTTCATCTATGCTTCTAACTCCTCAGAGTGAGGTTGAGATATTGCAGGCCAGCAATTTGAAGAGCTTCACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGCCCGGATAGCATGGTGGGTGAAGGTGGGTTTGGTTGTGTGTTTAAGGGGTGGATTGATGAGCAGACACTTGCCCCTACTAAACCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAGGATAGCAACCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGACAGCTGCGGCATCCTAATCTTGTGAAACTAATTGGTTACTCCTTAGAGGATGATCACCGGATTTTGGTGTATGAATTTGTGGCCAAGTGTAGTTTGGATAATCACTTGTTTAGGAGGGCTTCTTACTTTCAACCACTCTCTTGGAACATCCGTATGAAGGTAGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGATGTGATATATAGAGACTTCAAAACTTCTAATATCTTACTTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTTTGGCTATGCAGCTCCTGAGTATGTAGCCACAGGTCACCTAACCAAAAAGAGTGACATATACAGTTTTGGAGTTGTTCTCCTGGAACTTATGTCAGGCAAGCGTGCACTGGACAACAACAGGCCACCCGGGGAAAAAAATTTAGTTGAATGGGCCAAACCACTCCTTACCAACAAGAAAAAGATCTCCCAGGTTATGGATGCCCGCATAGAAGGTCAATACTCAAAGCGAGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATGCCTATCTACAGAACCAAAAGTTAGACCAGACATAGATGAGGTGGTGAGATCATTGGAACATCTTCAAGATTCCAATGACACAGGTGATGTAGTGGGAAGCTCTCAGTCTCAAGATCAaaccattaaaataaatggtCATAGCTCAAGCAGCGGTGGTACTCCTAATCCAAGTTTATCTCCTTCTCCTCTTCGTACATAG 1215 0.4305 MGCCFSVPPKIKAESPPRNGLNLKDGSKEENGLSLSSKVSSSSMLLTPQSEVEILQASNLKSFTFNELRTATRNFRPDSMVGEGGFGCVFKGWIDEQTLAPTKPGTGMVIAVKRLNQDSNQGHSEWLTEINYLGQLRHPNLVKLIGYSLEDDHRILVYEFVAKCSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYVATGHLTKKSDIYSFGVVLLELMSGKRALDNNRPPGEKNLVEWAKPLLTNKKKISQVMDARIEGQYSKREAKRIAHLAIQCLSTEPKVRPDIDEVVRSLEHLQDSNDTGDVVGSSQSQDQTIKINGHSSSSGGTPNPSLSPSPLRT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1475 404 MobiDBLite consensus disorder prediction 363 404 - -
Ssu9g1475 404 PANTHER KINASE 1B 25 390 - -
Ssu9g1475 404 MobiDBLite consensus disorder prediction 361 404 - -
Ssu9g1475 404 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Ssu9g1475 404 Pfam Protein tyrosine and serine/threonine kinase 79 357 IPR001245 GO:0004672|GO:0006468
Ssu9g1475 404 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1475 404 PANTHER OS01G0588500 PROTEIN-RELATED 25 390 - -
Ssu9g1475 404 CDD STKc_IRAK 81 360 - -
Ssu9g1475 404 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Ssu9g1475 404 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Ssu9g1475 404 Gene3D Transferase(Phosphotransferase) domain 1 162 383 - -
Ssu9g1475 404 MobiDBLite consensus disorder prediction 14 34 - -
Ssu9g1475 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1475 Ssu-Chr9 50073184 50076879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1475 61 365 Glycoside Hydrolase AT3G07070 47.883 4.85e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu9g1475 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1475 - - var:108326804 681.404