Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1472 ATGAGAAAACCTTGTTGTGACAAAGAGGGCACAAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTTATTGATTACATCCGAGCTCATGGAGCAGGACGTTGGTGTTCCCTTCCCAAGGCTGCAGGACTACATCGTTGTGGCAAAAGCTGTAGGTTGCGATGGACAAACTATTTACGACCAAACATTAAACGCGGCAACTTTGCCCAGGATGAAGAAGATCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTCATAGCAGGAAGGTTGCCAGGTCGCACAGATAACGAGGTGAAGAACTATTGGAATTCTCACATTCGTAGAAAGTTAATCAAGATGGGCATTGATCCAAACAACCACAAGGTACACCAAAGCTTCCCTGTTCCACAACCTTGCCATGTTTCACCAGCCACTAGTGCCCAATCATCTGGCTCCATGGACAGAGAACATATAGTCCCTTTCGTTACATCCCATGGTTCTGCGAATGACAGGGCTTCGGACACACTTAGTTGTCTGGTAGAAGAAACAGCAGCGGTTTCTTCGGTGTCGCACTTAAATCTTGACCTAACCATTGCTTTCCCTTCACCTACACGTGCCCTTGTGGAAGAAAAATCTAAACCTACTTCTCAATGCACCAACACAAGGAACATCGATGAGGATTCCGCTCCAACCGGCTTCCTTCTTTTTCTGTAA 708 0.4675 MRKPCCDKEGTNKGAWSKQEDQKLIDYIRAHGAGRWCSLPKAAGLHRCGKSCRLRWTNYLRPNIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKVHQSFPVPQPCHVSPATSAQSSGSMDREHIVPFVTSHGSANDRASDTLSCLVEETAAVSSVSHLNLDLTIAFPSPTRALVEEKSKPTSQCTNTRNIDEDSAPTGFLLFL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1472 235 SMART sant 12 62 IPR001005 -
Ssu9g1472 235 SMART sant 65 113 IPR001005 -
Ssu9g1472 235 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Ssu9g1472 235 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu9g1472 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Ssu9g1472 235 CDD SANT 68 111 IPR001005 -
Ssu9g1472 235 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu9g1472 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ssu9g1472 235 CDD SANT 15 60 IPR001005 -
Ssu9g1472 235 Gene3D - 13 65 - -
Ssu9g1472 235 Gene3D - 68 131 - -
Ssu9g1472 235 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Ssu9g1472 235 PANTHER MYB TRANSCRIPTION FACTOR 2 233 - -
Ssu9g1472 235 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu9g1472 235 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1472 Ssu-Chr9 50029621 50033625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1472 2 216 MYB Transcription Factor Family AT4G38620 50.901 1.00e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g1472 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1472 K09422 - tcc:18601922 297.745